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mmu_ciDars2_365
Basic information of circular RNA
PanCircBase ID:
mmu_ciDars2_365
mm39_Chr. Position ID:
chr1|160890451|160890816|-
Gene name:
Dars2
Transcript:
ENSMUST00000035430.4
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
4
Exon/intron offsets:
0
Genomic length:
365
Exon/intron sizes in nt:
365
Flanking exon/introns:
chr1:160890447-160890816
Splice length:
365
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTTCGTAGTCTGGGGAATGCAACCTTTCCTTTGTACATTTTCAGTGTCTGCGCATAGACTAACAACATAGACTGAGTCCCTGTGGACACAGCATTGAGTTCCTCAGGTCCACAAATGAACTCGCAGATGTCACCACACCCACTTAAGTGTGCACAAAAAAAATGTCTGTCAGCCTTGACAAATACATAACGATATTTGCTGACATAGGAACAATAATGTAAAGATTATATAGATTTTTATTATTCATAATCTACAATATAGCTTGACCCCTTTTGCACATGTATACGAATACATGTGTTTTACAAATGTGTGTCGAATACTTGTCCTGAAAAATGGCTTTCTAAAATAGCTCTTTCTTTTTCTTC
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
ACCCCTTTTGCACATGTATACG
58.99
AGTCTATGCGCAGACACTGA
58.82
160
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
ACCCCTTTTGCACATGTATACG
58.99
TGCGCAGACACTGAAAATGT
58.69
154
PCR template sequence:
ACCCCTTTTGCACATGTATACGAATACATGTGTTTTACAAATGTGTGTCGAATACTTGTCCTGAAAAATGGCTTTCTAAAATAGCTCTTTCTTTTTCTTCGTTCGTAGTCTGGGGAATGCAACCTTTCCTTTGTACATTTTCAGTGTCTGCGCATAGACTAACAACATAGACTGAGTCCCTGTGGACACAGCATTGAGTT
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
1
Interacting miRNAs (#binding sites)
mmu-miR-335-3p(1)
siRNAs for circular RNA silencing
Junction sequence
TTTCTTTTTCTTCGTTCGTAGTCTGG
siRNA sets
CTACGAACGAAGAAAAAGA, TACGAACGAAGAAAAAGAA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.842197312
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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