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mmu_ciCyp4f39_412
Basic information of circular RNA
PanCircBase ID:
mmu_ciCyp4f39_412
mm39_Chr. Position ID:
chr17|32710863|32711275|+
Gene name:
Cyp4f39
Transcript:
ENSMUST00000237491.2
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
13
Exon/intron offsets:
0
Genomic length:
412
Exon/intron sizes in nt:
412
Flanking exon/introns:
chr17:32710863-32711275
Splice length:
412
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTAAGGACCCAAACTAACCCCAAACATGGGAGGGGCAGAGTCATTGTCGGATCAGGAGTGTGCCCCATGGAAGCAGGGACCAAGCGACACCCACAAGTAATTTTAGGCAACTCAAGTCCTTTCTGCTTCCCTAACTGAACCAAGAGGTTCCGAATCAGACTGCAATTCCGTCCTTGAGAACAGGGTACTCCTCCATTATGTCGGACCCCGGGTTCTGGACTCACATACTTCCAATAGCTCTGTGATGCTGTCATCATTCGGGTTCTACAGAGGAAGGAACTGAAGCTTAGATAAGGGCGCTCATCTGTCAGGATGCATTGGTAGTAGTAAGCTGTGTGTTAGGATTTGAACGTTTGACTCCATTGTTGCACATCCTAAGAATTCTTGAGTCTCATTTGAACCCTTCCTTCAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
ACGTTTGACTCCATTGTTGCA
58.98
TACTTGTGGGTGTCGCTTGG
60.25
162
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
TGACTCCATTGTTGCACATCC
58.84
TACTTGTGGGTGTCGCTTGG
60.25
157
PCR template sequence:
ATGCATTGGTAGTAGTAAGCTGTGTGTTAGGATTTGAACGTTTGACTCCATTGTTGCACATCCTAAGAATTCTTGAGTCTCATTTGAACCCTTCCTTCAGGTAAGGACCCAAACTAACCCCAAACATGGGAGGGGCAGAGTCATTGTCGGATCAGGAGTGTGCCCCATGGAAGCAGGGACCAAGCGACACCCACAAGTAA
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
4
Interacting miRNAs (#binding sites)
mmu-miR-103-3p(1), mmu-miR-10b-5p(1), mmu-miR-107-3p(1), mmu-miR-301a-3p(1)
siRNAs for circular RNA silencing
Junction sequence
ACCCTTCCTTCAGGTAAGGACCCAAA
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.706043229
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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