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mmu_ciCyfip2_396
Basic information of circular RNA
PanCircBase ID:
mmu_ciCyfip2_396
mm39_Chr. Position ID:
chr11|46144940|46145336|-
Gene name:
Cyfip2
Transcript:
ENSMUST00000165599.9
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
17
Exon/intron offsets:
0
Genomic length:
396
Exon/intron sizes in nt:
396
Flanking exon/introns:
chr11:46144870-46145336
Splice length:
396
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTAAGAGATGGGATTGGGCCAACCAGGAAGTTCCTGGGGTGGAATGGGAGGGTGGCTTGCCTCTGAGCTCTGTGCTTTACAGAGGAAACTACTGAGTAGAGATTAGGCAAAGTGTTCCACTCCAAGGTCATTTGCCTCAGCCCCACAGATTGACTTAGAAAGGCCCTAACCCCACCTGCCCTTCCTGACTTTGTCTACCTCTTAACAGCTCTGCTTAGAAAATCACCTTGTCTAGGAACCAAGAAGTAATCTCCTAGGCCAAAATTTTTAAGCCAGGGGGTCCATCAGCATCATTGATTCTGATATCTGTGTGCAAATTTGAAAGCAAGTTCTTCCTACTTGGAGGCACGGGGAACACAGAGAGGGAGGGAGCTTGTCTTCAACTCCAAGCCATCT
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
TCTGTGTGCAAATTTGAAAGCA
57.88
GCACAGAGCTCAGAGGCAA
60
166
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
TCTGTGTGCAAATTTGAAAGCA
57.88
CACAGAGCTCAGAGGCAAGC
61.02
165
PCR template sequence:
ATTCTGATATCTGTGTGCAAATTTGAAAGCAAGTTCTTCCTACTTGGAGGCACGGGGAACACAGAGAGGGAGGGAGCTTGTCTTCAACTCCAAGCCATCTGTAAGAGATGGGATTGGGCCAACCAGGAAGTTCCTGGGGTGGAATGGGAGGGTGGCTTGCCTCTGAGCTCTGTGCTTTACAGAGGAAACTACTGAGTAGA
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
1
Interacting miRNAs (#binding sites)
mmu-miR-384-3p(1)
siRNAs for circular RNA silencing
Junction sequence
CTCCAAGCCATCTGTAAGAGATGGGA
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.797427506
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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