top of page
mmu_ciCrebbp_1266
Basic information of circular RNA
PanCircBase ID:
mmu_ciCrebbp_1266
mm39_Chr. Position ID:
chr16|3912660|3913926|-
Gene name:
Crebbp
Transcript:
ENSMUST00000023165.9
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
23
Exon/intron offsets:
0
Genomic length:
1266
Exon/intron sizes in nt:
1266
Flanking exon/introns:
chr16:3912650-3913926
Splice length:
1266
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTAAGTTTACTGAAGACTTCTGTTTCCTGGATTGTGTACTTGGAACTTCTTTAAAGTCTCCTTTCTTTTTTTGTAACATCTCAATGTGAGGGAGTGGTCAGCAGCTCTCATGTGTAAATTTCTCCTAGTGCTTTGTACATTTTTTTCATTGGAGTCATTCAGCTTGATGCATTTATGATCAGCTCATGCTTTCAATGACAATTAAGAAAGCTTAGAAAGGGGGGCTGCTGAGATGGCTCAGCGGTTAAGAGCGCCGACTGCTCTTCCAAAGGTCCTGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCTGTAATGAGATCTGACTCCTTCTGGAGTGTCTGAAGACAGCTATGTGTACTTACATATAATAAATAAAATAAATTTTAAAAAAAAGAAAGCTTAGAAAGTAGATTTCAGAAATACTGAGAGAACATTTGTTGCCAGATCCTTCTCAAGTTTATTAGCAGAGATGTCCCTCCCTTCCCTAAGAAACAGAACCAAGAGCCCTATCCAGGAAGGATGTTGTCACAGGCTTTTGGGAGCTGTTTTTGGTTTTGAGCTGCAAGCTGTCTCCTGTAGGGACAAGGCTTGCAGTCTTACAGTGTATGGGTGAGAATGGAGAGAGTTTTCCTTCAAGGATTTCAGCAAGAATGGTGATCTTGTGAGGTCCTTTGGGCCTATATCTGTGCTTGTCAGAATAGCCACTCAGTCCTGAAGGCAGTAAGCAGTCCTTGTGTAATGCTGGATTACTGCCCTGGAGTCCTAAGCTCCATTTTAGACTCCATTTTAAGTGAGCCTAGGTAGAAGGGAGCTCAGCCATTGACTAGGCCAAGGGTGTATCATGCTCCTTGTTGTTGTTAGAGTTCTTCAAGTTAGTTCTGGAGTCATAGGTAATCTGCCTGTTAGCATCTGTGAGATCGTTCACCCTCCACACAGAAGACTTGTGCTCAGCATAGGTCCAGGGCAGGGCCTGTCCCACCAGCTTCTGCTGAGGTGCCCGGGACTTGAGGCAAAGGGCGTGAATCCGCAGTGTCCTCAGCTGTGTCAGGTTCTGGCCATCTTTGTGGCATTTTGTCGCTTACTGTTAGAAATGGACAGAGAAGCTGACAATTACCTAAACCCTACATCTGCTTTTCCTTCATAAGACACTAATGTCACAGGATGGCACTCTTATGTTCTTACAAAACAACTGTTAGTCCTTGAAAGTAGCAAAGGTGAAATAGTCTCAACAGCTCTGCCTAATCTTATTCATTCAAA
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
AAATAGTCTCAACAGCTCTGCCT
59.74
TGACCACTCCCTCACATTGAG
59.37
140
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
AAATAGTCTCAACAGCTCTGCCT
59.74
TGACCACTCCCTCACATTGA
58.27
140
PCR template sequence:
CAGGATGGCACTCTTATGTTCTTACAAAACAACTGTTAGTCCTTGAAAGTAGCAAAGGTGAAATAGTCTCAACAGCTCTGCCTAATCTTATTCATTCAAAGTAAGTTTACTGAAGACTTCTGTTTCCTGGATTGTGTACTTGGAACTTCTTTAAAGTCTCCTTTCTTTTTTTGTAACATCTCAATGTGAGGGAGTGGTCA
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
8
Interacting miRNAs (#binding sites)
mmu-miR-23b-3p(1), mmu-miR-103-3p(1), mmu-miR-150-5p(1), mmu-miR-107-3p(1), mmu-miR-499-5p(1), mmu-miR-539-5p(1), mmu-miR-697(1), mmu-miR-3105-3p(1)
siRNAs for circular RNA silencing
Junction sequence
TTATTCATTCAAAGTAAGTTTACTGA
siRNA sets
GTAAACTTACTTTGAATGA, TAAACTTACTTTGAATGAA, AAACTTACTTTGAATGAAT
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.774399371
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
bottom of page