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mmu_ciCdc42bpg_507

Basic information of circular RNA
PanCircBase ID:

mmu_ciCdc42bpg_507

mm39_Chr. Position ID:

chr19|6361600|6362107|+

Gene name:

Cdc42bpg

Transcript:

ENSMUST00000025681.8

CircRNA type:

Circular intronic (ci)RNA

Exon/Intron count:

1

Exon/intron indexes:

8

Exon/intron offsets:

0

Genomic length:

507

Exon/intron sizes in nt:

507

Flanking exon/introns:

chr19:6361600-6362147

Splice length:

507

Other database IDs:

Human Ortholog IDs:
Mature spliced Sequence:

GTGAGTGACAGATGTCTCTATAAGAGGCTTGGCTTGGCCCTCTGAGCTATAGGAACCCCCGATGTTCTCTAGAGCAGCTAAAAGGCTTCGAGGCTCATGAGAGTTAGAGCTTGCCGTGGCTGGCTCACTGGCGTGGTGGATTGTACCAAGTGAAAGCCCTTTGACCTTAGTTGTTATCCTATAAACCGTAGTTCATGTATAAGAGGAAATTCATGCCGGGTGGTGGTGGCTCACACCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGACAGATTTCTGAGTTCTAGACCAGCCTGGTCTACAGAGCGAGTTCCAGGACAGTCAGGGCTACACAGAGAAACCCTGTCTCAAAAAAAAAAAAAAAAAAAAAAGAGGAAATTCCCTGCAGCCTCTTGGAGACCTTGAATTCAAAGGCTCATGGGAGTTGTGGTCCCTTTTGATGGGGGCTGTGTTATTCCCCAGTATGCACCCCAGTAAATGTCTAGTTCATGGGCCTCTCTGGTTCTC

Divergent primers for circular RNA PCR

Primer Set-1

Forward primer
Tm
Reverse primer
Tm
Product size

AAGGCTCATGGGAGTTGTGG

59.96

AGAGAACATCGGGGGTTCCT

60.25

167

Primer Set-2

Forward primer
Tm
Reverse primer
Tm
Product size

TGTGGTCCCTTTTGATGGGG

59.89

AGAGAACATCGGGGGTTCCT

60.25

152

PCR template sequence:

TCAAAGGCTCATGGGAGTTGTGGTCCCTTTTGATGGGGGCTGTGTTATTCCCCAGTATGCACCCCAGTAAATGTCTAGTTCATGGGCCTCTCTGGTTCTCGTGAGTGACAGATGTCTCTATAAGAGGCTTGGCTTGGCCCTCTGAGCTATAGGAACCCCCGATGTTCTCTAGAGCAGCTAAAAGGCTTCGAGGCTCATGA

Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs

2

Interacting miRNAs (#binding sites)

mmu-miR-342-5p(1), mmu-miR-3470b(1)

siRNAs for circular RNA silencing
Junction sequence

CTCTCTGGTTCTCGTGAGTGACAGAT

siRNA sets

NA

Protein-coding potential of circular RNAs

CPAT analysis

CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length

NA

NA

NA

NA

NA

ORF sequence:

NA

Peptide sequence:

NA

IRESfinder result

IRESfinder score

0.684075848

IRES/non IRES

IRES

riboCIRC information

riboCIRC ID

NA

NA

Evidence
Peptide sequence:

NA

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