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mmu_ciCdc42bpg_507
Basic information of circular RNA
PanCircBase ID:
mmu_ciCdc42bpg_507
mm39_Chr. Position ID:
chr19|6361600|6362107|+
Gene name:
Cdc42bpg
Transcript:
ENSMUST00000025681.8
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
8
Exon/intron offsets:
0
Genomic length:
507
Exon/intron sizes in nt:
507
Flanking exon/introns:
chr19:6361600-6362147
Splice length:
507
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTGAGTGACAGATGTCTCTATAAGAGGCTTGGCTTGGCCCTCTGAGCTATAGGAACCCCCGATGTTCTCTAGAGCAGCTAAAAGGCTTCGAGGCTCATGAGAGTTAGAGCTTGCCGTGGCTGGCTCACTGGCGTGGTGGATTGTACCAAGTGAAAGCCCTTTGACCTTAGTTGTTATCCTATAAACCGTAGTTCATGTATAAGAGGAAATTCATGCCGGGTGGTGGTGGCTCACACCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGACAGATTTCTGAGTTCTAGACCAGCCTGGTCTACAGAGCGAGTTCCAGGACAGTCAGGGCTACACAGAGAAACCCTGTCTCAAAAAAAAAAAAAAAAAAAAAAGAGGAAATTCCCTGCAGCCTCTTGGAGACCTTGAATTCAAAGGCTCATGGGAGTTGTGGTCCCTTTTGATGGGGGCTGTGTTATTCCCCAGTATGCACCCCAGTAAATGTCTAGTTCATGGGCCTCTCTGGTTCTC
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
AAGGCTCATGGGAGTTGTGG
59.96
AGAGAACATCGGGGGTTCCT
60.25
167
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
TGTGGTCCCTTTTGATGGGG
59.89
AGAGAACATCGGGGGTTCCT
60.25
152
PCR template sequence:
TCAAAGGCTCATGGGAGTTGTGGTCCCTTTTGATGGGGGCTGTGTTATTCCCCAGTATGCACCCCAGTAAATGTCTAGTTCATGGGCCTCTCTGGTTCTCGTGAGTGACAGATGTCTCTATAAGAGGCTTGGCTTGGCCCTCTGAGCTATAGGAACCCCCGATGTTCTCTAGAGCAGCTAAAAGGCTTCGAGGCTCATGA
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
2
Interacting miRNAs (#binding sites)
mmu-miR-342-5p(1), mmu-miR-3470b(1)
siRNAs for circular RNA silencing
Junction sequence
CTCTCTGGTTCTCGTGAGTGACAGAT
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.684075848
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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