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mmu_ciCcnt2_1128
Basic information of circular RNA
PanCircBase ID:
mmu_ciCcnt2_1128
mm39_Chr. Position ID:
chr1|127725933|127727061|+
Gene name:
Ccnt2
Transcript:
ENSMUST00000153359.2
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
2
Exon/intron offsets:
0
Genomic length:
1128
Exon/intron sizes in nt:
1128
Flanking exon/introns:
chr1:127725933-127727126
Splice length:
1128
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTAAGTATAAAGCTATTTTTAGTTTACAATTATAGTTAAATGACTTTTTTTAATTTTCACATTGATCCAATCTTTTAGAATAATTGCTAAAGTTTAAGTAAAATTTATGTAATTTTGGACTTGTTCCAGATAATATTCCTAATAGTAAATTAGAAGTAGTCAATTATTATCGGTGCTTAGGTTTGCAGAGATGCAATCTTTATTTTAAAAGTCCTGCTTTTCCATTTATATAAAGTAAAAATGTAGTGTGTGTTTGTGGCTTTTCAGTAATTGTTTCATCTACTCTAAACTAGAATAGTTTGAAGGAGCTATAAAGTAAATGTATAATTTTGTTCTGGCTTGATATTAAAGGTTGAACATTTTTTAAGTGGGCACTGTGGAAATGAGAACTGAACTAGCTTTTTGAATTAGCAAAACTTTGGTTAGTCAGCTAGACATGGTGGTATGCCTGTCATCCCAGACTGGATGGTGGAGACAGGAAGATCAGAATTTCAGGATTACCATTTACTACATACCAAGTTTAAGGCCACTTTGGGCTACATGAGACCCTGTCTCAGAAACTAACAAAAAAACTTTATTAGAAAAGCTAGCCTGTGAAATGTCACGTGCCCAATTTTTGGTCCATGATGAGAAGTAGAGATGGCATTTATTAGTATTGCCCTGCTCTGAGCCTTGAACTATGTTGGCATAAGGTAAGTTCTCTTTGAGAGTTTGCTGTAAGGGACATAGAAATGGACATGAGCGGGAACTGTTCATTAAGCCATATCAAATGGTCTCATCTTTGATTGTGATATTAAAATTGCTCTGTTTTATAAAGTCTTTATATGTGTGTGTGTTTTAAAAAAAACAAAACTAACACAAAGAGTGGTTTAAGAAGTTATACTTTGTGTATGGTGATTGTTGTAAATATGCTTTTTCATTTATATAATACTTTGTTAGGTTTTAAAACAAAATTATTAGTATTAATCATAAAATTAAAATATTAATATACTACTGAGGAGTGAAATGAGGAAAGTTTAATGATCTATAACTTTTATTACATTTTTCAGTAGTGTTAGCTATTAATAGAATATCATGTAAAGAAAAACACTTCTGATTTTCTGTTTGCTTTTGTCTTACTGGCAAATG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
ACATTTTTCAGTAGTGTTAGCTATT
55.02
TCTAAAAGATTGGATCAATGTGAAA
55.23
169
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
ACATTTTTCAGTAGTGTTAGCTATT
55.02
TTCTAAAAGATTGGATCAATGTGAA
55.23
170
PCR template sequence:
AACTTTTATTACATTTTTCAGTAGTGTTAGCTATTAATAGAATATCATGTAAAGAAAAACACTTCTGATTTTCTGTTTGCTTTTGTCTTACTGGCAAATGGTAAGTATAAAGCTATTTTTAGTTTACAATTATAGTTAAATGACTTTTTTTAATTTTCACATTGATCCAATCTTTTAGAATAATTGCTAAAGTTTAAGTA
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
4
Interacting miRNAs (#binding sites)
mmu-miR-335-5p(1), mmu-miR-24-3p(1), mmu-miR-340-5p(1), mmu-miR-7a-2-3p(1)
siRNAs for circular RNA silencing
Junction sequence
TTACTGGCAAATGGTAAGTATAAAGC
siRNA sets
TTTATACTTACCATTTGCC, TTATACTTACCATTTGCCA, TATACTTACCATTTGCCAG
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.910104377
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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