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mmu_ciCcdc97_249
Basic information of circular RNA
PanCircBase ID:
mmu_ciCcdc97_249
mm39_Chr. Position ID:
chr7|25413926|25414175|-
Gene name:
Ccdc97
Transcript:
ENSMUST00000002683.3
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
3
Exon/intron offsets:
0
Genomic length:
249
Exon/intron sizes in nt:
249
Flanking exon/introns:
chr7:25413907-25414175
Splice length:
249
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTAAGGGCAGGACCTGACACCCCACTCCTACCCCCGTGTTGTGTCACCCGGCTGGGCCCCAGCCTGTAAAAACAGACATGATGTCTGCCCTCACCCCCTTCCCTGCCATCTCCTCCTGATTGCTGTGGTACAGGCTCCAGGGCACAATATCACCATTGTGTCCAGTGTGTGTGCCAGGAGGGCAGAGACTGGGCTGTCTCAGCAGCACGGGCTGGGCATGGGGTGGTAACCTGTCTCCTTCAGGCTGCC
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
ATTGTGTCCAGTGTGTGTGC
58.98
GTGACACAACACGGGGGTAG
60.6
142
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
ATTGTGTCCAGTGTGTGTGC
58.98
CTGTTTTTACAGGCTGGGGC
59.4
170
PCR template sequence:
TCACCATTGTGTCCAGTGTGTGTGCCAGGAGGGCAGAGACTGGGCTGTCTCAGCAGCACGGGCTGGGCATGGGGTGGTAACCTGTCTCCTTCAGGCTGCCGTAAGGGCAGGACCTGACACCCCACTCCTACCCCCGTGTTGTGTCACCCGGCTGGGCCCCAGCCTGTAAAAACAGACATGATGTCTGCCCTCACCCCCTT
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
2
Interacting miRNAs (#binding sites)
mmu-miR-705(1), mmu-miR-129-5p(1)
siRNAs for circular RNA silencing
Junction sequence
CCTTCAGGCTGCCGTAAGGGCAGGAC
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.571304411
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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