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mmu_ciCcdc97_248
Basic information of circular RNA
PanCircBase ID:
mmu_ciCcdc97_248
mm39_Chr. Position ID:
chr7|25413927|25414175|-
Gene name:
Ccdc97
Transcript:
ENSMUST00000002683.3
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
3
Exon/intron offsets:
0
Genomic length:
248
Exon/intron sizes in nt:
248
Flanking exon/introns:
chr7:25413907-25414175
Splice length:
248
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTAAGGGCAGGACCTGACACCCCACTCCTACCCCCGTGTTGTGTCACCCGGCTGGGCCCCAGCCTGTAAAAACAGACATGATGTCTGCCCTCACCCCCTTCCCTGCCATCTCCTCCTGATTGCTGTGGTACAGGCTCCAGGGCACAATATCACCATTGTGTCCAGTGTGTGTGCCAGGAGGGCAGAGACTGGGCTGTCTCAGCAGCACGGGCTGGGCATGGGGTGGTAACCTGTCTCCTTCAGGCTGC
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
ATTGTGTCCAGTGTGTGTGC
58.98
GTGACACAACACGGGGGTAG
60.6
141
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
ATTGTGTCCAGTGTGTGTGC
58.98
CTGTTTTTACAGGCTGGGGC
59.4
169
PCR template sequence:
ATCACCATTGTGTCCAGTGTGTGTGCCAGGAGGGCAGAGACTGGGCTGTCTCAGCAGCACGGGCTGGGCATGGGGTGGTAACCTGTCTCCTTCAGGCTGCGTAAGGGCAGGACCTGACACCCCACTCCTACCCCCGTGTTGTGTCACCCGGCTGGGCCCCAGCCTGTAAAAACAGACATGATGTCTGCCCTCACCCCCTT
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
2
Interacting miRNAs (#binding sites)
mmu-miR-705(1), mmu-miR-129-5p(1)
siRNAs for circular RNA silencing
Junction sequence
TCCTTCAGGCTGCGTAAGGGCAGGAC
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.561209031
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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