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mmu_ciCcdc66_35

Basic information of circular RNA
PanCircBase ID:

mmu_ciCcdc66_35

mm39_Chr. Position ID:

chr14|27220645|27220680|-

Gene name:

Ccdc66

Transcript:

ENSMUST00000223689.2

CircRNA type:

Circular intronic (ci)RNA

Exon/Intron count:

1

Exon/intron indexes:

5

Exon/intron offsets:

0

Genomic length:

35

Exon/intron sizes in nt:

35

Flanking exon/introns:

chr14:27220501-27220680

Splice length:

35

Other database IDs:

Human Ortholog IDs:
Mature spliced Sequence:

GTAGGTGACTCTGTCTGTCTCAGGGGTAGATATCT

Divergent primers for circular RNA PCR

Primer Set-1

Forward primer
Tm
Reverse primer
Tm
Product size

NA

NA

NA

NA

NA

Primer Set-2

Forward primer
Tm
Reverse primer
Tm
Product size

NA

NA

NA

NA

NA

PCR template sequence:

CTCAGGGGTAGATATCTGTAGGTGACTCTGTCTG

Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs

2

Interacting miRNAs (#binding sites)

mmu-miR-125b-5p(1), mmu-miR-125a-5p(1)

siRNAs for circular RNA silencing
Junction sequence

GGGGTAGATATCTGTAGGTGACTCTG

siRNA sets

CACCTACAGATATCTACCC,TCACCTACAGATATCTACC,ACCTACAGATATCTACCCC

Protein-coding potential of circular RNAs

CPAT analysis

CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length

NA

NA

NA

NA

NA

ORF sequence:

NA

Peptide sequence:

NA

IRESfinder result

IRESfinder score

0.943006937

IRES/non IRES

IRES

riboCIRC information

riboCIRC ID

NA

NA

Evidence
Peptide sequence:

NA

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