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mmu_ciBtrc_4496
Basic information of circular RNA
PanCircBase ID:
mmu_ciBtrc_4496
mm39_Chr. Position ID:
chr19|45491602|45496098|+
Gene name:
Btrc
Transcript:
ENSMUST00000223764.2
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
2
Exon/intron offsets:
0
Genomic length:
4496
Exon/intron sizes in nt:
4496
Flanking exon/introns:
chr19:45491602-45496122
Splice length:
4496
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTATGTGCCCTTCCTGTAACGTCTTAGTTCATTTGCTACAGCAGTAGTGGAATTGGATCTTCAACCTTGCTCTCCCAGCCCTGCTTCTCCGTAACCTCAGTAGCCTCAGATTCACTGTGCAGCCAGGACAAGCCTCAAACTCAGCAGTCTTCTGTCTCAGCATTGAACGTGCTGGAAGGCCAAGCATGGTGGTGCGCGCCTTTAGTCTCAGCACTTGGGAGGCAGAGGTAGGTAGATCTCTGTGAGTTCGAGTCCAGGACAGCCAGGACTCTGTTACACACAGAAACTCTGTCTCTGGGGTGGGGTGGGGTGGGGTGGGGTGGGAGATAAAGGAAACTAACTGCTGGGACTACAAGTGTCTCACTCCTCGATACATTTCTCTTTTTAACATTTTTGTTTGGAGGCTGGAGAGCTGGCTCAGTAGTTAAGAGCACTGGCTGTTCTAGAGGACCTGAGTTCAATTCCCAGCACCCACATGGTGGCTCACAGATGTCTTTAAGTCCAGTTTCAGAGGATCCAGCAACCTTATACAGACATGCATGCAAGCAAAACACCAGCGCACAGGAGATAAAAATAAATAAATTTAAAATTTATGGTTTGGTTTGATAGTTACACACCAAGTCATTAATTTTACTTTCATCAAAATAAAAGAAAAACCAAACTGCAGAATTAAATTCCATTTTACTTTGTCTCCTTGCCCCTCTGCTCTGCCTTTTTGTTTAACCCATGTGCAGTTCCAAAGCTAGTTATATTTTTTGTCCGTGTTACCTGACTCGAGGCCCGACTTGTATTCTACGTTATTATTGTCAATTCCTTTCATGGACTTGGATTTAAATGTGAATTTTAGCAACAAGAAATTGTATGTTTGTTTTGTTGTTGTTGTTGTTGTTGAGGAGACATTCTCTCTCTAGCTCAAGCTGGCTAAAACACCGAGGTCCTCGTGCGGTGGCTTCTACCACATCCTGTAACAGTGCTTACATTGTAGGAATTAATTTTTGGTTTTTTCGAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCCTAGAACTCACTTTGTAGACCAGGCTGACCTCGAACTCAGAGATCCGCCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGCGTGCACCACCACCACCTGGCTAGGAATTAATTTTAAAAACAACATTTTGTAAATCTTTTGGAAAGAAGGTTCAGTTCTTGCTGTGTGTATCATCCCTCCGCTCCCTCCTGCCATGCATGCGCACACGAGAGACACTTGAGATGCCCTCGTTTTCTGTGGATCAAGCCAGGGTCTTGTTTGTAGAGAGCAAACACACTACTATTGACCTGTCCCCCCATCCCTGATGCAGGAGCTGTATGGGGATAGGAAGTAAACCCCCGAACCTGTGCAAACTAGATAAATACTCCATCACTAAGTAAACACCTCCAGAGTGTTTCCCTCTCTTCTTTCATGGTGATCCAAAACCCCGCAAAGCCTGAGAAACAGGATGTGTTTATGTAGGCTCCACTTTCATTAGGCTGTGAATACTTATAGTCAGAGTCAATAAATGCCGGGTCTTGTTTGAGGGTATTTTTCTGTTTTGACTGGTTTTGATGGTCATATGAAATTTAGAAAATACAAATGTGTGTGTGTGTGTATATATATATATATGTATGTAAATATATTTTTATATATGAATGATAGCTCAGCCAGTAAAATATTCACCATGCAAGCTAAGTACCCGAGTTTGATCCTCAGCGTCTATACAAGAGAGCTGAAAGAGGGGGTACATTTGTATTCCCAGACCTAGGGAGGCAAATGTAAGCAGATTCATGGGGCTCAGTGGCCTCCATTCACATGTATGTGAACACACACATACACACAAAATATAAAACACAATTGCCCGGAATTCTACCACAGAGACCTCTTTGTTTTTCTTATAAAGTTCTGATCATGTGTTTCTTTCCCTGTAGATCTGGAGTTTGTTGGGGTTTTTTTTTTTTTCTTTTTAATTTTTCTTAATATAGTCTCCTAGTATATTTTTATTAAATATGTTAAAATTCTATTTTTAAATAACTTTAGTCTTATACAGTACGTTTTGCAGTAGCGAACACATTATTTAACCCCTTTGTTAATCGTTTTCTGTATAAATTATACCATGGTAGACATTCTTATGCATTAATCTCCTAGACAGTCTCAGAAGAAAAACACCCAAAGTAGAATTGCTGTATTAAAGAATATGGGGAGTTTCAGTGGGTGTAATTTTGTTTTGTTTGTGTTTATTTTGGCTTGATGGTTTTGTTTGTTGTTTTTGGGTGTTTTGGGTTTGGTGTTGGAAATTGAACCACTAACCACTAGCCACTAGCCACTAACACCACCACCACCACCACCCCACCCCACCCCCGCTGCCCCGAAGCAGGAGCCTTTTAAAAGGATTCACTTCCCTTTGAGGTAGGGTCTTACTGTGTTCCGTGACCTGGCCTCAGACTTTACTATCCTCCTGGGATTGCAGCTGTGCGCGCACCCCGCTCACCTTGTCTGTAAAGGGCTTTTGGCCCATGCTGCCACACTGTCCTCCATGCACACTGAACAAACCGAGCCACTTCACAGCTAGCTGTGGAAGTGAGTGCTGCCTCTCTGAATCCTTGGCAGCTATTTCTTAAAGTCTTGTTTTTCTGAACTTAAAATAAATTACCCTTTAAAATTAAATTACCCTTTACAATTAGTTATTTGTATATTATGAATTACCACTTTTAAACAGAATTTTGCCTATATTCTTTGCTTAAATAGAATAGGTTTTGTCCTCTTGTAAAATACTGGATTTTGTGTAGCCATAGGCAAGCAGTTTTCTTTAATGCAATCTGAGTACACCTCTTGCTGTTGTCGTCCCAATCACTGAGACATGCTACTGTCTCAGGCTAGGCACTAAGGCCAGTGCTGATTGGATCAGGGTATTTTGCCAGATACTGGGCTGATCCCTAGTGTGTCTCTGATGGCCAGGCTGTGTTGTATTAAATCGTGTCCAATGCTTAGCAGCCACTTAAGTTTCTCAACCTACACCATCTATCTGTGTTTAGTAAACCAAACTACTTCAAAAATTGCCTGTAATCCATTAATGTAATGGTTTTGTTTGTAGTGTTAGGTGAAATTACTTCCAGGGACTTATTGCTGGGACATTGTAAAAGATCAGGAGCAATTTGATGACAGCCATTAAAAATGTAAGAATGCCTTTTGGAAACTTGTGATGTTGTAGAAAGTTTAAATATAAGAGATTCAGGAAATATCCCATCATTGTATTTTGTATGAAGAAGTGTTTGTTATCTTTAATTGGCTTATAGTCATATTCCTTTAATAAGAACTAGGTGATGGATGCCTCCATCTGCTTCTGCTTAAATATGAACATGTGATGCCAGCCACACAAGATCCATTTCAAGCTTGCTTTCCCCAGATCTGCTGGAAAATTTGACAGATAGCCATACAATTTTTATAATTAGAATAATGTTTAATAAGCATATTTGGATTGTTGCTAATGGCAGCCAAGTGTGCCTCCATATGATTCGGGGCAACATGCAAAGTAAAATGCATGCTGTCGGTCCTTTCCGTTCATGCCTGCAGACAGCAGACTGGAGGAATCCTTCCCCTTGTGAGCCTTGAGAAAGCCTCGGGGATGACTAGTTGTGACTGGCTGACCTGAGAACTTAGGACAGCAATGCCAGAAGTGTTATTAGAGTGGCCATCCTGTTTGACAGGCTCTTCTCCACCGAGGCTTTGGGGCCTATTGGGTGCTAAAGAGCTTTAATTGGGAAGTACGGTATCAGCCTGCCATATTTTTCCTTTGAAACGCTACCCTCATTTACTGGTAAGATTTTTTTATTCCATTTTAGGTCAGTTGTCACTTAGGTTTTATAGCAGTAAAATTTGTTTTGTTTTGTTTTTAGCACATGCAATCAGACTCCTTTGAACCCTAGTATCCCCATGTGTCTCTCCTCTCAGGGTGCTCCTGGGCCCTGTGCTCATCCCTCTCCTGAATGCCCACACGCCACGTCCCAGATCAGTCTGACTTGCTGCCTCTCTCTCCCTAGTACATTTAAAGGATATTTCTTTCGTTGAATAGCTTTGGAACAGCAGCAGTAATAGAACAGAATGAGAAATGGACCTAATATCAGGATTTCGGGGGGTCTGAATCACTGAGTTTGAGATGCCGTCTGTAGAACATCCCCTAGTGTTGAAATCCATATAGATAGATGTGAACTGTTTTCTGGACTCCTTTTTATTTTTAATGTCTTGGGGGGTTTGCTGGTTGTTAGCTTTAACTTCCTTATCTAACAGAAGATGGAAAATACTGTTCATTTCTGTAACCTTATGGAAAAATTATTGACACTCATTTTCCCCAAGTCTCTGTTTGAGCAAAGCTGGACCACGCTGGGGAGAGCGGTGTGCCTTTATCTCAGGCATGTGCTGCTCTTTTAAAGGGCTTTCTGTGAAGAATCGCTCAGCACCCGCTCTGTTCTTTTT
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
GGGCTTTCTGTGAAGAATCGC
59.87
GAGGTTACGGAGAAGCAGGG
59.82
142
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
GCGGTGTGCCTTTATCTCAG
58.99
GTTACGGAGAAGCAGGGCTG
60.74
179
PCR template sequence:
GACCACGCTGGGGAGAGCGGTGTGCCTTTATCTCAGGCATGTGCTGCTCTTTTAAAGGGCTTTCTGTGAAGAATCGCTCAGCACCCGCTCTGTTCTTTTTGTATGTGCCCTTCCTGTAACGTCTTAGTTCATTTGCTACAGCAGTAGTGGAATTGGATCTTCAACCTTGCTCTCCCAGCCCTGCTTCTCCGTAACCTCAG
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
34
Interacting miRNAs (#binding sites)
mmu-miR-322-5p(2), mmu-miR-709(2), mmu-miR-466d-3p(2), mmu-miR-669d-5p(2), mmu-miR-3065-5p(2), mmu-miR-466b-3p(2), mmu-miR-16-5p(1), mmu-miR-15a-5p(1), mmu-miR-7b-5p(1), mmu-miR-103-3p(1), mmu-miR-15b-5p(1), mmu-miR-298-5p(1), mmu-miR-7a-5p(1), mmu-miR-138-5p(1), mmu-miR-185-5p(1), mmu-miR-339-5p(1), mmu-miR-495-3p(1), mmu-miR-128-3p(1), mmu-miR-127-3p(1), mmu-miR-191-5p(1), mmu-miR-192-5p(1), mmu-miR-215-5p(1), mmu-miR-297a-5p(1), mmu-miR-107-3p(1), mmu-miR-98-5p(1), mmu-miR-499-5p(1), mmu-miR-466a-5p(1), mmu-miR-1187(1), mmu-miR-1198-5p(1), mmu-miR-466p-5p(1), mmu-miR-410-3p(1), mmu-miR-539-5p(1), mmu-miR-3087-3p(1), mmu-miR-697(1)
siRNAs for circular RNA silencing
Junction sequence
CTCTGTTCTTTTTGTATGTGCCCTTC
siRNA sets
AAGGGCACATACAAAAAGA, GAAGGGCACATACAAAAAG, ACATACAAAAAGAACAGAG
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.853596268
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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