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mmu_ciBirc6_776
Basic information of circular RNA
PanCircBase ID:
mmu_ciBirc6_776
mm39_Chr. Position ID:
chr17|74921427|74922203|+
Gene name:
Birc6
Transcript:
ENSMUST00000180037.8
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
30
Exon/intron offsets:
0
Genomic length:
776
Exon/intron sizes in nt:
776
Flanking exon/introns:
chr17:74921427-74922214
Splice length:
776
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTATTATAGAAGGAACTGAGAGGTTGTTCTTCTGCCTTGTTAGGGCTGGGGTTCAAGCTGTGCACCATCATGCTCAGCTTTTTGTTGGTTACTATGTGGATTCTGCTGGTCTGGAAGCTCATTATGTAGACCAGGCTGCTTTGACCACACAGACATCCACCTGCCCCTGTCTTCTAAATGGTGAACTTGAACACTTTTGTAATCTTTCTGTCTCCTCAAATGTTTAAGCATTAAAGGCTCATTTCCTTTTTGGCCAGTGATAGGTTTCATTTGAGCATTAAATAAGCTATAGAATATAATTGTTAGTATGAATTATAAGGTGTGGTACAGGTTTTATTTTGGTTTCCTGTGTGTCCTTTATCTTCTTTTGTATTCTGTTCTTTTTTTATTTTTGGTTAAATATTTATTTTATGTATATGAGTACACTGTAGCTGTCTTCAGACACACCAGATGTCTGAATCCCATTGGCGTCAGATCCCATTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGAATTGAACTCGGGACCTCTGGAAGAGCAGTCAATGCTCTTAACTGCTGAGCCATCTTTCCAGCCCCTTGTATCCTGTTTTATATTAGATTTCATTTTTATACTCACTTTGTGTCCATATTGTATCTTATGTATTATATATCATATATTACATTATATATTATAATATTTTGGTGTTGGTCATGATGCAGGGTGTTTTCATTTGTAAGATGGTGTCACAGTTGTCCTTAGAACTCAAATTTACTTGAGTCTTCTGTTCTTG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
TTGGTCATGATGCAGGGTGT
59.59
GAACCCCAGCCCTAACAAGG
60.32
140
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
TGTTGGTCATGATGCAGGGT
59.59
GAACCCCAGCCCTAACAAGG
60.32
142
PCR template sequence:
ATAATATTTTGGTGTTGGTCATGATGCAGGGTGTTTTCATTTGTAAGATGGTGTCACAGTTGTCCTTAGAACTCAAATTTACTTGAGTCTTCTGTTCTTGGTATTATAGAAGGAACTGAGAGGTTGTTCTTCTGCCTTGTTAGGGCTGGGGTTCAAGCTGTGCACCATCATGCTCAGCTTTTTGTTGGTTACTATGTGGA
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
12
Interacting miRNAs (#binding sites)
mmu-miR-155-5p(2), mmu-miR-134-5p(1), mmu-miR-7b-5p(1), mmu-miR-7a-5p(1), mmu-miR-320-3p(1), mmu-miR-139-5p(1), mmu-miR-381-3p(1), mmu-miR-191-5p(1), mmu-miR-541-5p(1), mmu-miR-369-3p(1), mmu-miR-3065-5p(1), mmu-miR-193b-3p(1)
siRNAs for circular RNA silencing
Junction sequence
TCTTCTGTTCTTGGTATTATAGAAGG
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.905035153
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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