top of page
mmu_ciBC051142_1781
Basic information of circular RNA
PanCircBase ID:
mmu_ciBC051142_1781
mm39_Chr. Position ID:
chr17|34647119|34648900|+
Gene name:
BC051142
Transcript:
ENSMUST00000131998.2
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
7
Exon/intron offsets:
0
Genomic length:
1781
Exon/intron sizes in nt:
1781
Flanking exon/introns:
chr17:34647119-34648904
Splice length:
1781
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTGAGTGTTCTATGGCTTGCTTTTAGTTCTGCCATTTTTTGTTTTGCAAGCCTTAATGTTTCAAATACTTGCTGCTGCTGTTGTTTTTACCCAAGTCTCCACCCCGGGGCCTTCCTTTTCTGTGTCATGTTTGGCTTTGCCGTTTGGCTGGATTTGTTTTTTATCCTTAAATTTGTATAACACATTCTCTCCAGTTATTGCTTTTTCAAAGAATGGAGACAATCAATATTTTCTACTAGACAGTAACCTTTCATTGGCCATCTCCCAAAAGGCTTTCTTCCCACTCCAATGGCTGTGGACAATTAATAATGTTAAATCCACATAAACAAACAAACAAACAAAGAAGCAAAAACAGAACCTTTGTGTTGCAATGTCTGCCATAGTCTTTCTCCTTTCTCAACCATAATTGGCCTCTACATCTCACATGTGAGTGGCTGTTTCCCCAACCTTTTCTATGATTGATATCTTCAGGGGAAGCTCCTCGCCATCCTGAGTGTCCCCTATTTGTCACTTCTGGCAGTGATAAGTGACTTCTACACCACAATCAGAGGATTGCACCTAACTGCAAGGCTTGACTGTGTACATTTCTGTGGCTGTAACAAATTACCCCAGCTTTCTGGCTTAACACAAGTCTACCAAGCTTCATGCCATCTAGTCTTCTGCCTTTGCACGTACCTTCCTCTGTCTTATCTGTTGCCCTCTTTTTGTTTATAAACACAGCTAGGTCATGCTTGAAAATAGAAGAGTGTGTGTGTGTGTGTGTGTGTACACCTGCCTCTCATACAAGGACTCGAAGGGCGGTTATAGACAAAATGCACAACCGCAGATCTCTTTCCAGACAGTTCAGTGCAGCAGGAATAAAGCCCAGGCTTGTGCAGGAGTCGGTACAAGTCAGTGCTATATGCTAGGAGTTTAAAAGTCTTAGCAAAGACAGGTCACTGTGGAAGCACAAAATAATTCCCTTAACAGTTTATTCAGAACAATTCTGAGACAGCCTGACCTCTGTCTATGCACTGACCCCCACTCCATTAATAGCATCACAGGTCACAGGGGTTGTTGGGGCACAGAAACCTTCACGGGGGGTATTGTTCTGCTTAACACACACACACACGTGCAAGAAGGGAGGAATTTTTTTGATGAATCTCTTGGTTAGGGATACTGTTTGGTGAAACCCCAAGACCAAAGTCAACCAGGGAAGGAAGGAAACAGTTTCTTTGGCTTACATTTCCACATTGTAATCCAATACTGAAGGAAGTCAGGACATGAACTGAAGCAGGGCAAGAACCTGGAGTCAGGAGCTGATACAGATGGCATTAGAGGGTGCTGCTTACTGGCTTGCTCCCCATGGCTTGCTCAGCCTCCTTTCTTACAGAACCCAGGACAACCAGACCAGGTAGCACCACCCACACTGGGCTTGGCCCTCCTCCAACAATCAAGCTTGTCTACATCAGATCTTCTGGAGGCATTTCCTCAACTGAGGCTGCCTCCTCCATACTAACTCTAGCTAAAGTCAATATAACATAAAACTATCCAGCACATACTCTTAAGATCAATTCCATCACCAAAATAAACAAAGTCTTACAGCAACAGCATTTGTCTGCTGAAAATTAAGCCCTTTAAAGGGTGGAATGGAAAGCAATAGCTAGCCCAAGGACACTAGCCAGTGCTGTCTCCCTGGGCTGGCCCTCAGCCCCTGAGAATGAGTGACAGTAACAGAACCTGACAGTCAAAGGTTGGAAGCCCAAATTTGAGGACTGGCCTCTTGATTTTCTGTTTATGTT
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
AGTCAAAGGTTGGAAGCCCA
59.44
AAACAACAGCAGCAGCAAGT
59.18
143
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
GCCCCTGAGAATGAGTGACA
59.38
AAACAACAGCAGCAGCAAGT
59.18
178
PCR template sequence:
GGCCCTCAGCCCCTGAGAATGAGTGACAGTAACAGAACCTGACAGTCAAAGGTTGGAAGCCCAAATTTGAGGACTGGCCTCTTGATTTTCTGTTTATGTTGTGAGTGTTCTATGGCTTGCTTTTAGTTCTGCCATTTTTTGTTTTGCAAGCCTTAATGTTTCAAATACTTGCTGCTGCTGTTGTTTTTACCCAAGTCTCC
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
27
Interacting miRNAs (#binding sites)
mmu-miR-15a-5p(2), mmu-miR-5101(2), mmu-miR-137-3p(1), mmu-miR-155-5p(1), mmu-miR-16-5p(1), mmu-miR-199a-5p(1), mmu-miR-19b-3p(1), mmu-miR-322-5p(1), mmu-miR-152-3p(1), mmu-miR-148b-3p(1), mmu-miR-148a-3p(1), mmu-miR-320-3p(1), mmu-miR-139-5p(1), mmu-miR-128-3p(1), mmu-miR-136-5p(1), mmu-miR-433-5p(1), mmu-miR-153-3p(1), mmu-miR-494-3p(1), mmu-miR-127-5p(1), mmu-miR-194-5p(1), mmu-miR-370-3p(1), mmu-miR-324-3p(1), mmu-miR-466d-3p(1), mmu-miR-224-5p(1), mmu-miR-1187(1), mmu-miR-466b-3p(1), mmu-miR-7a-1-3p(1)
siRNAs for circular RNA silencing
Junction sequence
TTCTGTTTATGTTGTGAGTGTTCTAT
siRNA sets
AACACTCACAACATAAACA, ATAGAACACTCACAACATA, ACACTCACAACATAAACAG
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.821580642
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
bottom of page