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mmu_ciBbs1_205
Basic information of circular RNA
PanCircBase ID:
mmu_ciBbs1_205
mm39_Chr. Position ID:
chr19|4940812|4941017|-
Gene name:
Bbs1
Transcript:
ENSMUST00000053506.8
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
16
Exon/intron offsets:
0
Genomic length:
205
Exon/intron sizes in nt:
205
Flanking exon/introns:
chr19:4940786-4941017
Splice length:
205
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTAGGTGGCTACTTCAGAGGCAAGTGGGACCCTGGGGAAGCAGTAGGATGAGGCTGGAGAAGACTATGGGACCCAGGGCTGTGATAGGGTGTTAGCACAGCAGAGACCCCCAGCCTTGCCATTCCTTTGGCAGGTAAGCCGGGAGCCTGTCACTTGAGCCAGCAGACAGATTTGCTGCTAGTGAAGAGGGGAGGTCAAGTTGCCC
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
CAGCCTTGCCATTCCTTTGG
59.75
TCCAGCCTCATCCTACTGCT
60.03
153
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
CCAGCCTTGCCATTCCTTTG
59.75
TCCAGCCTCATCCTACTGCT
60.03
154
PCR template sequence:
ACCCCCAGCCTTGCCATTCCTTTGGCAGGTAAGCCGGGAGCCTGTCACTTGAGCCAGCAGACAGATTTGCTGCTAGTGAAGAGGGGAGGTCAAGTTGCCCGTAGGTGGCTACTTCAGAGGCAAGTGGGACCCTGGGGAAGCAGTAGGATGAGGCTGGAGAAGACTATGGGACCCAGGGCTGTGATAGGGTGTTAGCACAG
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
5
Interacting miRNAs (#binding sites)
mmu-miR-15a-5p(1), mmu-miR-322-5p(1), mmu-miR-15b-5p(1), mmu-miR-207(1), mmu-miR-673-5p(1)
siRNAs for circular RNA silencing
Junction sequence
GGTCAAGTTGCCCGTAGGTGGCTACT
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.518298218
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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