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mmu_ciBaz1b_1265
Basic information of circular RNA
PanCircBase ID:
mmu_ciBaz1b_1265
mm39_Chr. Position ID:
chr5|135259188|135260453|+
Gene name:
Baz1b
Transcript:
ENSMUST00000002825.6
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
12
Exon/intron offsets:
0
Genomic length:
1265
Exon/intron sizes in nt:
1265
Flanking exon/introns:
chr5:135259188-135260453
Splice length:
1265
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTAAGAGTGCAAGAAAATCCCCTGGGAAAGCTGCCACTCTCAGAAACTCAGCCTAGAGTCATTTCTAGAGCTGTGTCTTATCCTGCTAAAAAGATCAAGTTTTGGTTTAGGTCTGTTTTGCATAATACATGTGGAACCAAAAGATCATGTATGCAATGTTTTCTTTGTCATCTCTTTTGTTTGCTAAGTATCAGGAAATGGGCCAAATCTAGTTCTTTTCTCTTGCTGACATTGGGTTCTTTTTCTTTCTGGCTTGATTTTTTTTTTTTCCTTTTTTTTCCCCTACATGGACCTTACACATAGAAGATCAAGCTTGTCTCTTGATTCTGCCTCCTTAGTGCAAGGAATACACTTGACTGTATTCTTTAAAATTGGTATTCCCTATGTGACTGACAAGATTGTAGTGCACACCGTTTAAGAATACACTTTTGTGAACCGAAGGGTTAGGAGCACACACTGCTCTGGTAAGCACCACATGGAGTTTCCAGCACCCAGATGCACCTCCAGCTCCCGCATCACACCGCCCTGCTGCACTGCACTCAGGTACACACACTCACTCAAGCAGGCACATAGGTATGATTAAAAATAAAATAAAATATATCTTTATTAAAAATATAAGCCAAAGCCGGACAGTGGTGGCACACGCCTTTAATCCCAGCACTCGGGAGGCAGAGGCAGGCGGATTTCTGAGTTCGAGGCCAACCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTGTGTGTGTGGGGGATATATATATATATGTATATATATATAATTTTGATAGTTATTTAGTGCCTGTCTCTCTGTCTCTTCATCTGTAAATAAACAGAGGTTTAATGGAGACGAAAGAATGTAAAGCTTAATGCTTGCCCTCAGCCAGAAAGTCAGAAAAGCTTGAGTCTTCTCAGACGTCTCTGCTCTCCTTGCCTGTGTTTTATTTCCGGTACTGGGGTTTAAACGTATGGCCTCACGCATGCTTCTTCACACAGCCTCTGTACCTCACCCCTCACATTTGCCCTGCATGTAGTAAGTAGTAATTACTGAGTGGATGGATTCCTTGGAGAGGTGGAATTTCAGAGTTCTGGATCCTTTTATAGGGGAAGTGGAAGAAGTCAGGTGCTGTTAGATCCCTAGTTATTATGGAAGGCACGCAGGTAACTCGTGGGACAGTTCTGGATGTTAGGCCCAACTTCTTTATTGGTCTTGTCCTCCTCTCAGTCTCAATTGTAAATCTTTCTTCCAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
AACTCGTGGGACAGTTCTGG
59.61
AGGCTGAGTTTCTGAGAGTGG
59.38
141
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
ACTCGTGGGACAGTTCTGGA
60.47
AGGCTGAGTTTCTGAGAGTGG
59.38
140
PCR template sequence:
AAGGCACGCAGGTAACTCGTGGGACAGTTCTGGATGTTAGGCCCAACTTCTTTATTGGTCTTGTCCTCCTCTCAGTCTCAATTGTAAATCTTTCTTCCAGGTAAGAGTGCAAGAAAATCCCCTGGGAAAGCTGCCACTCTCAGAAACTCAGCCTAGAGTCATTTCTAGAGCTGTGTCTTATCCTGCTAAAAAGATCAAGT
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
10
Interacting miRNAs (#binding sites)
mmu-miR-7b-5p(1), mmu-miR-18a-5p(1), mmu-miR-709(1), mmu-miR-136-5p(1), mmu-miR-466d-3p(1), mmu-miR-29b-2-5p(1), mmu-miR-3087-3p(1), mmu-miR-3470b(1), mmu-miR-574-5p(1), mmu-miR-344-3p(1)
siRNAs for circular RNA silencing
Junction sequence
ATCTTTCTTCCAGGTAAGAGTGCAAG
siRNA sets
TTGCACTCTTACCTGGAAG
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.87715589
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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