top of page
mmu_ciBag6_38
Basic information of circular RNA
PanCircBase ID:
mmu_ciBag6_38
mm39_Chr. Position ID:
chr17|35361360|35361398|+
Gene name:
Bag6
Transcript:
ENSMUST00000166426.9
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
10
Exon/intron offsets:
0
Genomic length:
38
Exon/intron sizes in nt:
38
Flanking exon/introns:
chr17:35361360-35361702
Splice length:
38
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTAAGAACAAGATGATGAGTGTAGGCTGAGAGCTCTGG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
NA
NA
NA
NA
NA
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
NA
NA
NA
NA
NA
PCR template sequence:
TGTAGGCTGAGAGCTCTGGGTAAGAACAAGATGATGAG
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
NA
Interacting miRNAs (#binding sites)
NA
siRNAs for circular RNA silencing
Junction sequence
CTGAGAGCTCTGGGTAAGAACAAGAT
siRNA sets
ATCTTGTTCTTACCCAGAG, TCTTACCCAGAGCTCTCAG, TTCTTACCCAGAGCTCTCA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.126829334
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
bottom of page