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mmu_ciB4galt5_741
Basic information of circular RNA
PanCircBase ID:
mmu_ciB4galt5_741
mm39_Chr. Position ID:
chr2|167147769|167148510|-
Gene name:
B4galt5
Transcript:
ENSMUST00000109221.9
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
5
Exon/intron offsets:
0
Genomic length:
741
Exon/intron sizes in nt:
741
Flanking exon/introns:
chr2:167147767-167148510
Splice length:
741
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTGAGTGCTCCGTGGTTCCTTTCTCTTTCTTCTGAGCCTGAAATCTGAAAAGGTGCATGTGACACTGTCTTCAGGTGAGCTGAGTCCTCCCACATCAATCGTTAATCAAGAAAGCACTCCTCAGAGCCACCCCAGGCCAGTCTCAAGGAGCTGTTTTCTCAGCTGAGAGCCCCTCGTCCAGCCTTCCTCTCAGCTGTGTCAGGTTGACAATCAGCACATTCCTGTGCCTCTCCTGAGTATGTGTTCTGGTACTGGCCGGGGTAAGTGAAGGTTAATGTGCAGCCCACCTAGGCCATAACTAGTGTAAACTAGCCTCCCCTGCCACAGAATCCATAATCCTCAGACATTTGTCCTTGGAGGGCTCAGTGGCTGTTGTGGAGGGAGCTTTAGAACAGACATGCTGAGATGACCAGAAGGGCCCGCCCTCTTTGATGTTCATGAAGTAGGTGGCCCCGTGGAGGGCACAGTGAAGACAGTGTGGGCATGTAGGCTGGAGACTTGAGTGCCTGGCCTGCCCCTGTATAACCTGTGGCTGTGTGTTCAGCTGCAGTGCATGCTGCTGCAGTGCTCTCTGAAGGAACAAGGCACAACCACAACCCAGCAGGCTCCCTGATGACCGTGGGCTGAGCAGCTCTGCCCAGACTCTGTGGGCCCTCAGGTCTTTCTGTGCGGCTTCTAGGAGCCCTTTTGGTGTGCAGAGAAGGCAGTCAGGTCTTCACTTAAGGAACACATTGTTCTTTC
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
TGTGCAGAGAAGGCAGTCAG
59.97
ATGTGGGAGGACTCAGCTCA
60.25
145
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
TGTGCAGAGAAGGCAGTCAG
59.97
TGATGTGGGAGGACTCAGCT
60.25
147
PCR template sequence:
ACTCTGTGGGCCCTCAGGTCTTTCTGTGCGGCTTCTAGGAGCCCTTTTGGTGTGCAGAGAAGGCAGTCAGGTCTTCACTTAAGGAACACATTGTTCTTTCGTGAGTGCTCCGTGGTTCCTTTCTCTTTCTTCTGAGCCTGAAATCTGAAAAGGTGCATGTGACACTGTCTTCAGGTGAGCTGAGTCCTCCCACATCAATC
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
7
Interacting miRNAs (#binding sites)
mmu-miR-103-3p(1), mmu-miR-24-3p(1), mmu-miR-370-3p(1), mmu-miR-107-3p(1), mmu-miR-342-5p(1), mmu-miR-1198-5p(1), mmu-miR-484(1)
siRNAs for circular RNA silencing
Junction sequence
ACATTGTTCTTTCGTGAGTGCTCCGT
siRNA sets
ACTCACGAAAGAACAATGT
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.682083786
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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