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mmu_ciAtp6v0a1_1151
Basic information of circular RNA
PanCircBase ID:
mmu_ciAtp6v0a1_1151
mm39_Chr. Position ID:
chr11|100920084|100921235|+
Gene name:
Atp6v0a1
Transcript:
ENSMUST00000154896.8
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
7
Exon/intron offsets:
0
Genomic length:
1151
Exon/intron sizes in nt:
1151
Flanking exon/introns:
chr11:100920084-100921235
Splice length:
1151
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTAAGAGATGTTACCTGCAACCAAGAGGCACAGCTGTGCTGTCTGCTAAAGGCTCAGAAAAGTGAGGCCTGCAGATCCCTCAGTTCTGCTTTCACTGGGAATGACATTAGGAGTATTTGAAACCATCAAATGTAGCTCAGGTTTCATTTTATGTACTTTTCAAGTATCAGAAGGCCAGCTCAGGGGCTCAGGTGCTCACTGCACAAGCATACGGTCTGGAGCCTGGAGCCCTAACACCTCGTAAGTGCCAGGTGCGCATGGCAGCTGTCATCCCAGCATTTGGGAAGCTGACGGTGGGAGCTCAAGAGCACGCTGGCTAATTAGGTTCTCTGCGTGGGCGAACTCTAGGCTCAATTGAGACCCCACCTAAATGACTCCTGGTGTCAACCGTGGGTCCCCAAGACATGCACACACACATGCAAATGTCCCTGCCCACACACATACATATATATATATATATATATATATATATATATATATATATATACACACATGCATGCTGCACACACATACTCATATCCCCACCCAAAAACCCAGCAAAGTCCTAATTCCTTTATTCAGGGACCGTGGGTTTACATGCCAACATAGTGCCACAGACACTGTATAAACGTTCTGGTATTCCGGCTATGGACAGAAATTTTACCACGTCATTTTTCTCTAGTAACTTCTAATAAAAATTATTTTTTAAATTATTTTTTCAACATTCTTTTGTAAAGATTTGTTTATTTTGTGTTTATGAGTGTTTTGCCTGAATGTGTTATGTGCACCACATGCATGCCTGGTGCCTTTGGAGGCCAACAGAAGAGTGTCAGATCCCCTAGAGCTGGAATTACAGGCAGGTGTGACCCACCACTCTGGTACTAGGAACTGAACCTGAAAGAGGAGCCTGTACTCACACCCGCTCAGCCATCTTTCCAGCCCCTTAGTATTTTTTGATCTCAAAATTCTTTCATAGCTGTAGAGAATGTCAAGACTGCTCGGCATTATTGCTGTCTGCAGGCCACGTCACATGAGTGATTAATGTTCATTACCACAACAGGCCAGTCTGGCTGTGCTTATCCTGTAGTAAGCTAGGATTAGTTTCCAAGGGGATTTGCATGGACTGCACTAAGACACTTCAGTGTTCCTAAAGCTGTTCCTGTACTCTCCAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
TCCAAGGGGATTTGCATGGA
59.29
GGATCTGCAGGCCTCACTTT
60.03
147
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
CCAAGGGGATTTGCATGGAC
59.17
GGATCTGCAGGCCTCACTTT
60.03
146
PCR template sequence:
GTGCTTATCCTGTAGTAAGCTAGGATTAGTTTCCAAGGGGATTTGCATGGACTGCACTAAGACACTTCAGTGTTCCTAAAGCTGTTCCTGTACTCTCCAGGTAAGAGATGTTACCTGCAACCAAGAGGCACAGCTGTGCTGTCTGCTAAAGGCTCAGAAAAGTGAGGCCTGCAGATCCCTCAGTTCTGCTTTCACTGGGA
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
15
Interacting miRNAs (#binding sites)
mmu-miR-297a-5p(5), mmu-miR-466a-5p(4), mmu-miR-1187(4), mmu-miR-466p-5p(4), mmu-miR-124-3p(1), mmu-miR-221-3p(1), mmu-miR-223-3p(1), mmu-miR-351-5p(1), mmu-miR-383-5p(1), mmu-miR-29b-2-5p(1), mmu-miR-673-5p(1), mmu-miR-669d-5p(1), mmu-miR-670-5p(1), mmu-miR-574-5p(1), mmu-miR-339-3p(1)
siRNAs for circular RNA silencing
Junction sequence
CTGTACTCTCCAGGTAAGAGATGTTA
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.67585404
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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