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mmu_ciAtp5j_407
Basic information of circular RNA
PanCircBase ID:
mmu_ciAtp5j_407
mm39_Chr. Position ID:
chr16|84631901|84632308|-
Gene name:
Atp5j
Transcript:
ENSMUST00000114191.8
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
1
Exon/intron offsets:
0
Genomic length:
407
Exon/intron sizes in nt:
407
Flanking exon/introns:
chr16:84631871-84632308
Splice length:
407
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTAAGGTCCCGGGGCCCTTCCCGTGGAATCGGCGCTAAGGAACCCCAGCCCCTCTCCCGCCTCCCAGGCACCCCCGGGCCTGGAACTACAACTCCCAGCAGGCTGCGCGGCCCGAAACGCCCGCGACGACGGGGCTCACGAGGCACAAACGCCCCCCAGCCGCTTTGGTTTTTTGTTTTGTTTTGGTTTTGGTTTTTACGCGCTCCTTTGTACCCCCACCCTACATCCACCTCCCCAACCCCAAGGATCGGGACGCTGACTCCGAAGGGAGCTTGAACTAGGGGACAGGCCAGAATACGCATGCGTACAGTGCAGTGTCTCCAAGAGGGAAAAGGGGGTGAAGTTAAAGTGTAGGAAAGATGGCGGAGTCTTAGCTGAGGGACCCGGAAGCACTTACCCTCCACTTC
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
CGGAGTCTTAGCTGAGGGAC
59.26
GGGAGTTGTAGTTCCAGGCC
60.04
140
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
GTGCAGTGTCTCCAAGAGGG
60.32
TTCCTTAGCGCCGATTCCAC
60.46
140
PCR template sequence:
CAGTGCAGTGTCTCCAAGAGGGAAAAGGGGGTGAAGTTAAAGTGTAGGAAAGATGGCGGAGTCTTAGCTGAGGGACCCGGAAGCACTTACCCTCCACTTCGTAAGGTCCCGGGGCCCTTCCCGTGGAATCGGCGCTAAGGAACCCCAGCCCCTCTCCCGCCTCCCAGGCACCCCCGGGCCTGGAACTACAACTCCCAGCA
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
3
Interacting miRNAs (#binding sites)
mmu-miR-363-3p(1), mmu-miR-370-3p(1), mmu-miR-705(1)
siRNAs for circular RNA silencing
Junction sequence
TACCCTCCACTTCGTAAGGTCCCGGG
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.371262469
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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