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mmu_ciArhgap12_1167
Basic information of circular RNA
PanCircBase ID:
mmu_ciArhgap12_1167
mm39_Chr. Position ID:
chr18|6033282|6034449|-
Gene name:
Arhgap12
Transcript:
ENSMUST00000182066.8
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
10
Exon/intron offsets:
0
Genomic length:
1167
Exon/intron sizes in nt:
1167
Flanking exon/introns:
chr18:6033257-6034449
Splice length:
1167
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTGAGTTGTTTCCTCGTTGGCTGATAAATGCCCATATAAAAATGTAGTCTTCAGTATTAGAAAAGTGACAGGGTTAATTAAGTACTATCTTTTAACTCATTGTCACTTTTAACCATAGAATGCATTCATGTGATATAATAATTTTAAGGCAGGATACTTCAAGAGAAAATACACTTCTCTTGAGGCCTCTAGGAAGTTAGACTCTTTTGAGTTAAAAATATGTAATTTTGCATAAAATCTTCAACTTTGGGAGTCTGAAGTCAAGGGATAATCATTCCATAGCCCCACCCCTACTCCAGGCACCAGACAGCCAGCTCACTGTCATGTGCTCATGCCCACAGCCATGTGCTTGGCTCTCTAGAGCACCAGCCAGCTAGCTCACTGTCATGTGCTCATGCACACAGCCATGTGCTTGGCTCTCTAGAGCACCAGACAGCCAGCTCACTGTCATGTGCTCATGCCCACAGCCATGTGCTTGGCTCTCTAGAGCACCAGACAGCCAGCTCACTGTCATGTTCTCATGCCCACAGCCATGTGCTTGGCTCTCTAGAGCACCAGACAGCCAGCTCACTGTCATGTTCTCATGCCCACAGCCATGTGCTTGGCTCTCTAGAGCACCAGACAGCCAGCTCACTGTCATGTTCTCATGCCCACAGCCATGTGCTTGGATCTCTAGAGCACCAGACAACCAGCTCACTGTCATGTGCTCATGCCCACAGCCATGTGCTTGGATCTCTAGAGCACCAGACAGCCAGCTCACTGTCATGTGCTCATGCCCACAGCCATGTGCTTGGACCTCTAGAGCACACAAATGGGAGCAGAGCTAAGCTACCAGTTTTAAGAAAGATAGTTTCAAATGCAGACTCTTGTAAAGTATATTATCGACCATTAGCTGTGACTCCACACCTTTTCTGGCTTAACTAATCCACATGCTTAGCTAACGGTTTTCTGGCCTTCTAATTAAGTGATTAGAAAGTAACTTCTAGTTTTGTTTTCCAACAATATAATATTTTACACACACATACACACACATTTTATTACTTTTAGTTATAAAAATGAAAATTTTACTTAAAATTAGAATAACCATTTCTTCTGTAATTTTTGATCATAGGATTGATATGTTTTGTGTTATCTATGGAAAAACTCTAACTAGAGAAGTTTTCTGAA
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
ACCATTTCTTCTGTAATTTTTGATCA
56.12
ACCCTGTCACTTTTCTAATACTGA
57.32
159
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
TGATCATAGGATTGATATGTTTTGTGT
57.37
AACCCTGTCACTTTTCTAATACTGA
57.93
140
PCR template sequence:
CTTAAAATTAGAATAACCATTTCTTCTGTAATTTTTGATCATAGGATTGATATGTTTTGTGTTATCTATGGAAAAACTCTAACTAGAGAAGTTTTCTGAAGTGAGTTGTTTCCTCGTTGGCTGATAAATGCCCATATAAAAATGTAGTCTTCAGTATTAGAAAAGTGACAGGGTTAATTAAGTACTATCTTTTAACTCAT
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
11
Interacting miRNAs (#binding sites)
mmu-miR-34c-5p(7), mmu-miR-34a-5p(1), mmu-miR-138-5p(1), mmu-miR-34b-5p(1), mmu-miR-297a-5p(1), mmu-miR-466a-5p(1), mmu-miR-1187(1), mmu-miR-466p-5p(1), mmu-miR-673-5p(1), mmu-miR-335-3p(1), mmu-miR-574-5p(1)
siRNAs for circular RNA silencing
Junction sequence
GAAGTTTTCTGAAGTGAGTTGTTTCC
siRNA sets
AACTCACTTCAGAAAACTT, CAACTCACTTCAGAAAACT, AAACAACTCACTTCAGAAA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.813397921
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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