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mmu_ciArfgap2_295
Basic information of circular RNA
PanCircBase ID:
mmu_ciArfgap2_295
mm39_Chr. Position ID:
chr2|91100634|91100929|+
Gene name:
Arfgap2
Transcript:
ENSMUST00000080008.13
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
10
Exon/intron offsets:
0
Genomic length:
295
Exon/intron sizes in nt:
295
Flanking exon/introns:
chr2:91100634-91103885
Splice length:
295
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTGAGGCTCGGGCCCTGGTGTGTTAGAAAAATGCCATTGTTTTTCTGGGAGCCAGAACAGGCTCTACCCAGTCAGTCAGGGTTCCTTGCTTAGTCTTCCTCTGAGGCTAAAGACAGAAAATGTTGTTGTTTTAAAGTACCTTGGACAGTGGTTGGCCACACGTGTTAGTTGCCTAAGTTTTAAGAGAGCAGGATCAGGTGCTGTTTTTTTACTCCAGGTTAGGACGGCACTTATTAATATGGCTGCTTTGTGACTGAGCAGTTTTTTTCCCCAAGACCTGAGAACCTTAGGGCTT
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
TACTCCAGGTTAGGACGGCA
59.96
ACTGACTGGGTAGAGCCTGT
59.88
162
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
TACTCCAGGTTAGGACGGCA
59.96
GCAAGGAACCCTGACTGACT
59.6
175
PCR template sequence:
AGGTGCTGTTTTTTTACTCCAGGTTAGGACGGCACTTATTAATATGGCTGCTTTGTGACTGAGCAGTTTTTTTCCCCAAGACCTGAGAACCTTAGGGCTTGTGAGGCTCGGGCCCTGGTGTGTTAGAAAAATGCCATTGTTTTTCTGGGAGCCAGAACAGGCTCTACCCAGTCAGTCAGGGTTCCTTGCTTAGTCTTCCT
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
3
Interacting miRNAs (#binding sites)
mmu-miR-7a-5p(1), mmu-miR-350-3p(1), mmu-miR-490-3p(1)
siRNAs for circular RNA silencing
Junction sequence
AACCTTAGGGCTTGTGAGGCTCGGGC
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.731460627
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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