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mmu_ciAqr_2127

Basic information of circular RNA
PanCircBase ID:

mmu_ciAqr_2127

mm39_Chr. Position ID:

chr2|113936457|113938584|-

Gene name:

Aqr

Transcript:

ENSMUST00000043160.13

CircRNA type:

Circular intronic (ci)RNA

Exon/Intron count:

1

Exon/intron indexes:

32

Exon/intron offsets:

0

Genomic length:

2127

Exon/intron sizes in nt:

2127

Flanking exon/introns:

chr2:113936455-113938584

Splice length:

2127

Other database IDs:

Human Ortholog IDs:
Mature spliced Sequence:

GTACGTGGGGTACAGACTGTGCACGCTTACTAAAGCTCACTGTCTGCTTCTGTTGTGAGCTTCAGTGACAAAGTAGCTCTAGACTTGTTTGATTCATTGCTATAGTTAATCATTATGGCAGCGTGTAGTACTTTTTGTAGGAATAACACCAGACCCCTCATGTGGTTTATCACTGCTCTTACTACTGCAGGTTTGACTCATACTGTAATGAGTGTGGCTATTGTTCACAGTCAGTGACATGCAGAGAGAACTTTATGCCGGAGGATCTTGATTGTCGTGGATCTGTTAGAAACAGTGTCCGAATGAATCAAAGGAGCTAGCGAGGAAGGGGCCTCTTATGGGACGTGCTTCAGCGCATAAGGCTTCCGGCTTTCCTCTCCCCACTGTCTTTCCGCTTCACGAGAGGATAAAGGAGCCCTTTGTTCTCCCAGGATTAAGAATGGTCCGAACAAACAATAACCTATTTTTATCATTTTTGTGATGTATTTATGTACTAGAGATTTATGGGAGTAATATCTTCTTATTACAAAGCAGCCGTTTGGTTTTATATAAATCTTCATCTCATGTGACTGGCTAGCAAAACTCAGGCGAGCCAGAGTTCATTGTCTTAATTTATTCGATGGGTATAAAGAGAAGGTTCTCCAAGCGCTCATAAATTGTCATTAAGTCTAGATCTCTTTGGAGCTTAGGTCACATTCTATTAGACTGATAGTCTTTATGTAAGAGGAACCAAAGACAAAAGTGTTTTAAGAAATTGTTACAAAATGATAGCAGAAAGTTAGCTTATTCTTGCTTATTAACATCTCAAACATACTGTTACGTCTTTCCCTAACCGATGTAACTACTGTCTGGATGGCCATTACTGCTGACCTTAGACCCCTCAGCTCCAAGTGTGCATGCTTGAATGTTATGTCCTCTTCTTCCTCTGCAGCTACCAGGCCTACATTTAGATACATTCAGGCAAAAGACCCATACATATGTACAAGGAAAATACACCTTTTTAAAAAAATTCAGTAACTTGAATTCTGTAGTGATCTCTACCTAAGTTTCTGTAAACTAAAAATGCTTACGACTAGGTGGTGACTCAAAAGGTGACTTCAGTATGCCACGCATCAACAGCTTTCCTAATCACACACACCCTTATCCTTCTATTATTTGTCAATGTGCGAGCTTCTGGATATGCAGGAATCAATTTAGCTTCCACAGTCTCCACCCTTGAGTTTGGAGCCCAGTGTGAGACACATTCAAGTAACTTAGGAAGATGCCTCTTACCGAATACACCCAAAAGGTCTGGGCTATGGGGCCACACTTGTGAAAACCTGTTAGCCACTACAGTACCAGAGACTAGGGTAAATGTCCGTTCACGAGGACCTGGACAGTGCTATTTGCTTGAGATAGAGCTGGAGCCTCTTGGATGTGAGGAAACCACACAGTGGGAAAGTGATTTGTCAAGAACGGCTAAAGGCACTTCCTTCTTCCACCGCTCCGCTCCGTTGTTTCCTAGACAGCACTGTTTACATGATCTGTTCTATTTCTGTGGAAGAACTAATGCTAAGGAATTCTAGCACTTACCAGCTAGAAACATACACACACACATATATATACACATACGTACACACACACACACACACATCCAGAAGCTAACACACTGCCAATTGGGATCTCTGCATAACTCTACATTAGGAATTTGAAAAGAAGCAAAAGAAATTTCTACTCGTATATAAAACTGGTAAATTTTCTAGGAAGGAAAATTTTTTCCTTGATAGAGCGTATGAATTTGTTGGCAGAAAAGTGAAAGAAGTTGACTGTTACAGTGAAGATAACTATGCAGTAATCAGTTGCTGGACCTGAGCCGTATGATTCTGCTAGGGATCCGTGGATGTTTTAAACCAGTGCCTTGGTTATTTTGTCTCCTATGTGGGCACGCATGCCCAATAACTAACAAGGTGTTGGCAAAGAAGCACTCACTTGGTTTACTGATCAATATATTGGTTTGCTTTATTGTTATTAAGTTCCCAAGGATTTTATTACAATAGTTTCATGAGACTATTCACTAGATTATGTAAAACGAGGAAAGGGGCTGTATATGTACATTACTAATTTTAACCTAATTACCTTGTTTCCTAA

Divergent primers for circular RNA PCR

Primer Set-1

Forward primer
Tm
Reverse primer
Tm
Product size

AAAACGAGGAAAGGGGCTGT

59.81

AGCTACTTTGTCACTGAAGCTCA

59.93

141

Primer Set-2

Forward primer
Tm
Reverse primer
Tm
Product size

AAAACGAGGAAAGGGGCTGT

59.81

GCTACTTTGTCACTGAAGCTCAC

59.81

140

PCR template sequence:

TTACAATAGTTTCATGAGACTATTCACTAGATTATGTAAAACGAGGAAAGGGGCTGTATATGTACATTACTAATTTTAACCTAATTACCTTGTTTCCTAAGTACGTGGGGTACAGACTGTGCACGCTTACTAAAGCTCACTGTCTGCTTCTGTTGTGAGCTTCAGTGACAAAGTAGCTCTAGACTTGTTTGATTCATTGC

Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs

29

Interacting miRNAs (#binding sites)

mmu-miR-466a-5p(4), mmu-miR-466p-5p(4), mmu-miR-199b-3p(2), mmu-miR-199a-3p(2), mmu-miR-1187(2), mmu-miR-9-5p(1), mmu-miR-34c-5p(1), mmu-miR-30e-5p(1), mmu-miR-34a-5p(1), mmu-miR-30a-5p(1), mmu-miR-298-5p(1), mmu-miR-320-3p(1), mmu-miR-143-3p(1), mmu-miR-181b-5p(1), mmu-miR-30d-5p(1), mmu-miR-24-3p(1), mmu-miR-127-5p(1), mmu-miR-194-5p(1), mmu-miR-215-5p(1), mmu-miR-362-5p(1), mmu-miR-34b-5p(1), mmu-miR-297a-5p(1), mmu-miR-384-3p(1), mmu-miR-29b-2-5p(1), mmu-miR-5101(1), mmu-miR-3065-5p(1), mmu-miR-574-5p(1), mmu-miR-7a-1-3p(1), mmu-miR-7a-2-3p(1)

siRNAs for circular RNA silencing
Junction sequence

CCTTGTTTCCTAAGTACGTGGGGTAC

siRNA sets

ACGTACTTAGGAAACAAGG

Protein-coding potential of circular RNAs

CPAT analysis

CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length

NA

NA

NA

NA

NA

ORF sequence:

NA

Peptide sequence:

NA

IRESfinder result

IRESfinder score

0.793005278

IRES/non IRES

IRES

riboCIRC information

riboCIRC ID

NA

NA

Evidence
Peptide sequence:

NA

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