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mmu_ciAqr_2127
Basic information of circular RNA
PanCircBase ID:
mmu_ciAqr_2127
mm39_Chr. Position ID:
chr2|113936457|113938584|-
Gene name:
Aqr
Transcript:
ENSMUST00000043160.13
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
32
Exon/intron offsets:
0
Genomic length:
2127
Exon/intron sizes in nt:
2127
Flanking exon/introns:
chr2:113936455-113938584
Splice length:
2127
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTACGTGGGGTACAGACTGTGCACGCTTACTAAAGCTCACTGTCTGCTTCTGTTGTGAGCTTCAGTGACAAAGTAGCTCTAGACTTGTTTGATTCATTGCTATAGTTAATCATTATGGCAGCGTGTAGTACTTTTTGTAGGAATAACACCAGACCCCTCATGTGGTTTATCACTGCTCTTACTACTGCAGGTTTGACTCATACTGTAATGAGTGTGGCTATTGTTCACAGTCAGTGACATGCAGAGAGAACTTTATGCCGGAGGATCTTGATTGTCGTGGATCTGTTAGAAACAGTGTCCGAATGAATCAAAGGAGCTAGCGAGGAAGGGGCCTCTTATGGGACGTGCTTCAGCGCATAAGGCTTCCGGCTTTCCTCTCCCCACTGTCTTTCCGCTTCACGAGAGGATAAAGGAGCCCTTTGTTCTCCCAGGATTAAGAATGGTCCGAACAAACAATAACCTATTTTTATCATTTTTGTGATGTATTTATGTACTAGAGATTTATGGGAGTAATATCTTCTTATTACAAAGCAGCCGTTTGGTTTTATATAAATCTTCATCTCATGTGACTGGCTAGCAAAACTCAGGCGAGCCAGAGTTCATTGTCTTAATTTATTCGATGGGTATAAAGAGAAGGTTCTCCAAGCGCTCATAAATTGTCATTAAGTCTAGATCTCTTTGGAGCTTAGGTCACATTCTATTAGACTGATAGTCTTTATGTAAGAGGAACCAAAGACAAAAGTGTTTTAAGAAATTGTTACAAAATGATAGCAGAAAGTTAGCTTATTCTTGCTTATTAACATCTCAAACATACTGTTACGTCTTTCCCTAACCGATGTAACTACTGTCTGGATGGCCATTACTGCTGACCTTAGACCCCTCAGCTCCAAGTGTGCATGCTTGAATGTTATGTCCTCTTCTTCCTCTGCAGCTACCAGGCCTACATTTAGATACATTCAGGCAAAAGACCCATACATATGTACAAGGAAAATACACCTTTTTAAAAAAATTCAGTAACTTGAATTCTGTAGTGATCTCTACCTAAGTTTCTGTAAACTAAAAATGCTTACGACTAGGTGGTGACTCAAAAGGTGACTTCAGTATGCCACGCATCAACAGCTTTCCTAATCACACACACCCTTATCCTTCTATTATTTGTCAATGTGCGAGCTTCTGGATATGCAGGAATCAATTTAGCTTCCACAGTCTCCACCCTTGAGTTTGGAGCCCAGTGTGAGACACATTCAAGTAACTTAGGAAGATGCCTCTTACCGAATACACCCAAAAGGTCTGGGCTATGGGGCCACACTTGTGAAAACCTGTTAGCCACTACAGTACCAGAGACTAGGGTAAATGTCCGTTCACGAGGACCTGGACAGTGCTATTTGCTTGAGATAGAGCTGGAGCCTCTTGGATGTGAGGAAACCACACAGTGGGAAAGTGATTTGTCAAGAACGGCTAAAGGCACTTCCTTCTTCCACCGCTCCGCTCCGTTGTTTCCTAGACAGCACTGTTTACATGATCTGTTCTATTTCTGTGGAAGAACTAATGCTAAGGAATTCTAGCACTTACCAGCTAGAAACATACACACACACATATATATACACATACGTACACACACACACACACACATCCAGAAGCTAACACACTGCCAATTGGGATCTCTGCATAACTCTACATTAGGAATTTGAAAAGAAGCAAAAGAAATTTCTACTCGTATATAAAACTGGTAAATTTTCTAGGAAGGAAAATTTTTTCCTTGATAGAGCGTATGAATTTGTTGGCAGAAAAGTGAAAGAAGTTGACTGTTACAGTGAAGATAACTATGCAGTAATCAGTTGCTGGACCTGAGCCGTATGATTCTGCTAGGGATCCGTGGATGTTTTAAACCAGTGCCTTGGTTATTTTGTCTCCTATGTGGGCACGCATGCCCAATAACTAACAAGGTGTTGGCAAAGAAGCACTCACTTGGTTTACTGATCAATATATTGGTTTGCTTTATTGTTATTAAGTTCCCAAGGATTTTATTACAATAGTTTCATGAGACTATTCACTAGATTATGTAAAACGAGGAAAGGGGCTGTATATGTACATTACTAATTTTAACCTAATTACCTTGTTTCCTAA
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
AAAACGAGGAAAGGGGCTGT
59.81
AGCTACTTTGTCACTGAAGCTCA
59.93
141
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
AAAACGAGGAAAGGGGCTGT
59.81
GCTACTTTGTCACTGAAGCTCAC
59.81
140
PCR template sequence:
TTACAATAGTTTCATGAGACTATTCACTAGATTATGTAAAACGAGGAAAGGGGCTGTATATGTACATTACTAATTTTAACCTAATTACCTTGTTTCCTAAGTACGTGGGGTACAGACTGTGCACGCTTACTAAAGCTCACTGTCTGCTTCTGTTGTGAGCTTCAGTGACAAAGTAGCTCTAGACTTGTTTGATTCATTGC
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
29
Interacting miRNAs (#binding sites)
mmu-miR-466a-5p(4), mmu-miR-466p-5p(4), mmu-miR-199b-3p(2), mmu-miR-199a-3p(2), mmu-miR-1187(2), mmu-miR-9-5p(1), mmu-miR-34c-5p(1), mmu-miR-30e-5p(1), mmu-miR-34a-5p(1), mmu-miR-30a-5p(1), mmu-miR-298-5p(1), mmu-miR-320-3p(1), mmu-miR-143-3p(1), mmu-miR-181b-5p(1), mmu-miR-30d-5p(1), mmu-miR-24-3p(1), mmu-miR-127-5p(1), mmu-miR-194-5p(1), mmu-miR-215-5p(1), mmu-miR-362-5p(1), mmu-miR-34b-5p(1), mmu-miR-297a-5p(1), mmu-miR-384-3p(1), mmu-miR-29b-2-5p(1), mmu-miR-5101(1), mmu-miR-3065-5p(1), mmu-miR-574-5p(1), mmu-miR-7a-1-3p(1), mmu-miR-7a-2-3p(1)
siRNAs for circular RNA silencing
Junction sequence
CCTTGTTTCCTAAGTACGTGGGGTAC
siRNA sets
ACGTACTTAGGAAACAAGG
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.793005278
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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