top of page
mmu_ciAnapc1_2410
Basic information of circular RNA
PanCircBase ID:
mmu_ciAnapc1_2410
mm39_Chr. Position ID:
chr2|128484643|128487053|-
Gene name:
Anapc1
Transcript:
ENSMUST00000014499.10
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
27
Exon/intron offsets:
0
Genomic length:
2410
Exon/intron sizes in nt:
2410
Flanking exon/introns:
chr2:128484637-128487053
Splice length:
2410
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTATGTTCAATTCTATGCTCATTAACAGTAGACTAAGTTCATAGTTAAAACCAAAGAAAGTTTCTCTGCCCTCACTGATTTTTAAGCATTAATAGCTGCTCTGGTGGCTTTTGAAACTCCAATACAAATTGTATTACTTTTCCGTAGCTGTGACAAAATACTGCTGTCAAGCAGCTTAGGGGAGAGGAGAGTCTCTGGCTCCTGGTTTAAGGGGATGCAGTTTATTACTGCAGGAAAGCGTGAGGATGGGGACAAGTTGTGGCTGGAGCTTCCTCAAATCTGAACAATGAGACGCAGACAGGACGGCTGGAAACCGCAGGACCAGCTCTCAGTGTCTCGATTCTTCCAGTAGTTCCCAAATGCCACACTCTTCCAGAACAGCACTGCCCACGGGGACAAAGGAGTTAGAATATAGCCTACTACTAATTTTGCATTTTAATGTGATTATTTTAAGATATAAAAAGTTGGAAGAGTTATTGTTGAAGAAGATGGAACTATTTAGGGCTGGATGTGGTGGCACACCTTCCATCTCAGCATGTGGGAGGCAGAGGCAGGGGAATCTCTTGAGTTCCAGACCAACTGGGGTAACATAGTGAGATTCTGTTTTGTTGTGTGTTGCTAAAGTCTAATTTGTACAGTATTCATTCTCTTGAGATACTCATTGTTTCTCTGTGTGTGCAGTTACAAATAAAACACTGTTCATCTCTTCAGAATTTGTTTTTGATGATGTTTTCAAAGTTCTGAAGATTTTGGTAGCTTTCTTTGTTCATTAATTTATTTAATTTAAATGTCCATCTCGTTGTCATTTTGGCACGATTGTTATCATAGCAGTCTCATAAATGTCCATTGATGACTCAAACTAACATAAGCCATTTAGAATATAAAGATGATTTCGCCATGTCGGTGTACACAATATGTATAGAAACTCAAAAGAATTAGAAAAAAATTGAACTGAACTTATAGCATCACAAATAATTTATATCGCTTGTGGATCTTCACCTGAGAGAGTGTTCCTTACTAGTTCCCTTGGTAACGTCTCTGTAAACAGATACTTTCTGTTTTGGCCCAGTGTCTTTGTCTTACTATATATAGCTCAGGCCAGCCTCAAAATTTCCATCCTCCTGTGAGGCCTCTTGAATGCTGGGATTATAGGCATGTGCTACCATATTCAGTTAAATTTGGCATTTTAAAAGAAATTGCTTAGTTGTTGTGTATGTGTGTGCATATGGAGGTGAGAGAACAGAGCTGCAGTTAGGTGGCCATCACCTGATGTGGATGCACGGAAGTGGTCCGAACAGTACAGCCATCCATCTCTCCAGCTACAAGTTTGGCATTTTTTTTTAAAGACTTATTTATTATATGTAAGTACACTGTAGCTGTCTTCAGACACACCACAAGAGAGCATCAGATCTCATTATGGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCATGACCTTCAGAAGAACAGTCAGAGCTCTTAATCACTGAGCCATCTCTCCAGCCCAAGTTTGGCATTTTAAACAACAACATATTTAGATACTTACAGTTAGACGTGAAGAGGATGGATATACAAGTCAAAAAAAGGGCAGATTTCTGAAAGTTAAACATTTTCATTGCTTTAATCCTCAGACAACAACACAGGAGTGAGTGTTAGAAATGAGCATTAGTGCCCCCAGTCAGCTGTTGAAATTGGTCACTCATGTAGTTTAAACTGTGACATTGGCCTTCATTTAGTTTCCGTCTATCTCTGCAGCTGCAAACACTGTAGAGCAGTGAGAACTCTGACCTGTCTGTTTGAAGTCAAAGCTGTCAGTTATTTTATTGTGTGTTAACAAAATGGACCCTGAAAATATTCTAAATAATATAGTTTGCTTTGTTTGATTGTTGTTTTTGGGAACAGAGTCTCAGTATGTAACCCTGAACTCTGACTGGCCTGGAACTCTATGTAGATCAGATTGGGCTCCAATTCATGGAGATCCAGTAGCCTTTGCCTCTGGGTTTTTGGGGTTATAGGCTTGTGCTGCTATGGCCAGGCAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAATTTGAAATATTTATTTTATGTGTATATGTGTATCTGAGTGTTTGCATGTGTACCACGTTTGGGAAGGACTCTAAGGAGGTCAGAAGAGGCATTGAATCCCTAGGAAACAGAGTCACACAAACTTGTGAGTTGCCATATGGATGCTGGGAAGTAAATCTCAGCCCTCTGCAAGAGAAGCAAGTGCTCTTAACTGTTGAGCCATCTCTCTAGCTCTTAATCTGGGGTTTTGAATGTAACTTTATTTCAAAGACTTGAATTTTAGTTATGTAAATTCTCCTAATTCCTTTCTCCTCTGTCT
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
TCTCTCTAGCTCTTAATCTGGGGT
59.83
TCAGTGAGGGCAGAGAAACT
58.28
175
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
CTCTCTAGCTCTTAATCTGGGGT
58.52
TCAGTGAGGGCAGAGAAACT
58.28
174
PCR template sequence:
CCATCTCTCTAGCTCTTAATCTGGGGTTTTGAATGTAACTTTATTTCAAAGACTTGAATTTTAGTTATGTAAATTCTCCTAATTCCTTTCTCCTCTGTCTGTATGTTCAATTCTATGCTCATTAACAGTAGACTAAGTTCATAGTTAAAACCAAAGAAAGTTTCTCTGCCCTCACTGATTTTTAAGCATTAATAGCTGCT
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
27
Interacting miRNAs (#binding sites)
mmu-miR-466b-3p(3), mmu-miR-155-5p(2), mmu-miR-139-5p(2), mmu-miR-466d-3p(2), mmu-miR-9-5p(1), mmu-miR-15a-5p(1), mmu-miR-429-3p(1), mmu-miR-181a-5p(1), mmu-miR-34c-5p(1), mmu-miR-34a-5p(1), mmu-miR-15b-5p(1), mmu-miR-298-5p(1), mmu-miR-324-5p(1), mmu-miR-143-3p(1), mmu-miR-181b-5p(1), mmu-miR-24-3p(1), mmu-miR-483-5p(1), mmu-miR-541-5p(1), mmu-miR-342-3p(1), mmu-miR-377-3p(1), mmu-miR-207(1), mmu-miR-673-5p(1), mmu-miR-539-5p(1), mmu-miR-188-3p(1), mmu-miR-540-3p(1), mmu-miR-574-5p(1), mmu-miR-296-3p(1)
siRNAs for circular RNA silencing
Junction sequence
TTCTCCTCTGTCTGTATGTTCAATTC
siRNA sets
ATTGAACATACAGACAGAG, GAATTGAACATACAGACAG, TTGAACATACAGACAGAGG
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.857843867
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
bottom of page