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mmu_ciAhsa2_82
Basic information of circular RNA
PanCircBase ID:
mmu_ciAhsa2_82
mm39_Chr. Position ID:
chr11|23440347|23440429|-
Gene name:
Ahsa2
Transcript:
ENSMUST00000124801.8
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
5
Exon/intron offsets:
0
Genomic length:
82
Exon/intron sizes in nt:
82
Flanking exon/introns:
chr11:23439707-23440429
Splice length:
82
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTTTACTTGAGCTTACCGCCCAGAATGCTTGAATTAGTTAGGTTTTTATAAGGACATCCTTTTTAAAATAGAAACCTGTCCT
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
TCCTTTTTAAAATAGAAACCTGTCCTG
58.14
ATTCAAGCATTCTGGGCGGT
60.32
60
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
TCCTTTTTAAAATAGAAACCTGTCCT
56.99
ATTCAAGCATTCTGGGCGGT
60.32
60
PCR template sequence:
GTTTTTATAAGGACATCCTTTTTAAAATAGAAACCTGTCCTGTTTACTTGAGCTTACCGCCCAGAATGCTTGAATTAGTTAG
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
NA
Interacting miRNAs (#binding sites)
NA
siRNAs for circular RNA silencing
Junction sequence
AGAAACCTGTCCTGTTTACTTGAGCT
siRNA sets
CTCAAGTAAACAGGACAGG, TCAAGTAAACAGGACAGGT, GTAAACAGGACAGGTTTCT
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.957559711
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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