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mmu_ciAdgrg1_450
Basic information of circular RNA
PanCircBase ID:
mmu_ciAdgrg1_450
mm39_Chr. Position ID:
chr8|95732959|95733409|+
Gene name:
Adgrg1
Transcript:
ENSMUST00000179619.9
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
6
Exon/intron offsets:
0
Genomic length:
450
Exon/intron sizes in nt:
450
Flanking exon/introns:
chr8:95732959-95733449
Splice length:
450
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTACGGAGTCTCCTCTTACCTGCTCCTAGGGTAACTGATAATACACACACACACACACACACACACACACACACACATATGCAAATATATGTATATGGGTATATATATACATATATGTGTATATATGTATGTGTATGTATATATATATGTATACATGCATATATACATATGGGTATATACATACATACATACACACACACACACACACACACACACACACACACATATCTGACAGAGGGGTGGAAAGGTGGTAGCTAACCTACTCCAGGAGCCAAATACAGGCAGGAAGGGCCCTCCAATGCACAGAGCTCCTAGGAGAGGTGTGAATAGTGCTGTTCTCATCCAGTGTGAATGACCAGCAAGACCCTCAGAGCAAAATGTTAGGAGCGACAGTAGTCTAGAAAGGGTGGGCAGAGGCCTTCTTAGCTTTTCTTCTTCTCAGCCTTAAAT
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
CAGCAAGACCCTCAGAGCAA
59.96
TGTGTGTGTGTGTGTGTGTG
59.13
157
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
CAGCAAGACCCTCAGAGCAA
59.96
TGTGTGTGTGTGTGTGTGTG
59.13
159
PCR template sequence:
AATGACCAGCAAGACCCTCAGAGCAAAATGTTAGGAGCGACAGTAGTCTAGAAAGGGTGGGCAGAGGCCTTCTTAGCTTTTCTTCTTCTCAGCCTTAAATGTACGGAGTCTCCTCTTACCTGCTCCTAGGGTAACTGATAATACACACACACACACACACACACACACACACACACATATGCAAATATATGTATATGGGT
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
10
Interacting miRNAs (#binding sites)
mmu-miR-466a-5p(5), mmu-miR-1187(5), mmu-miR-466p-5p(5), mmu-miR-574-5p(4), mmu-miR-297a-5p(3), mmu-miR-33-5p(1), mmu-miR-431-5p(1), mmu-miR-466d-3p(1), mmu-miR-190b-5p(1), mmu-miR-466b-3p(1)
siRNAs for circular RNA silencing
Junction sequence
CTCAGCCTTAAATGTACGGAGTCTCC
siRNA sets
GACTCCGTACATTTAAGGC, ACTCCGTACATTTAAGGCT, CTCCGTACATTTAAGGCTG
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.508650578
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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