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mmu_ciAdgra3_1825
Basic information of circular RNA
PanCircBase ID:
mmu_ciAdgra3_1825
mm39_Chr. Position ID:
chr5|50168909|50170734|-
Gene name:
Adgra3
Transcript:
ENSMUST00000030971.7
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
4
Exon/intron offsets:
0
Genomic length:
1825
Exon/intron sizes in nt:
1825
Flanking exon/introns:
chr5:50168904-50170734
Splice length:
1825
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTAAGTACTGTTTCTACCCTATTAAAATGTAAGGTATTTGAACCACTAGGTACTCACGAGGCTCTGAGCATCAGTGGTATTTAATATTCAAGTAGTAACTGTAGGCCTTGCAGAAGCCACAGGGACAGGAAGCTTACAACTGGGTCAGGAGATGCAGTGTCCTCAGAACAGAAGATGGGTTCAGAATCCCTTACTAAAGGAGTACTTCAGACTTGAGGTGATCTCGTGTGCACAAGGAGATATTCTGCAGATGGGCCCCAAACGTAAACATGGAGTCCATTTCTCATTCATAATCACCCCTCAGTCAGAGCCTGCAGATGGTCTCACATAATATTCCAAACACTCTGTTGCATGAAACACAAGTTTCATGGTACAAAATTTTCCATGCTGCTGTTATGGAATTCAAATATTTTGGAGCATTTTGGATTTCAGATTTTCTTATTTAGGATTCTAATATACTATCTCAGCACATCAGTCCTGTTATCTCACTGGAGGTCATTGTGTACTGATTTTTCAGAGTTGGTGCTTGTGTGGTAGCAGGGCTCGAATCCCAGTCTAAGAACTCATTGTTGTAGATGTGACAGGAGCTGACCCCCTGCCTCCACCCTATCAGTCTCTCTCCTCCCTCCACAGTTGACACTGTCATATTGTAGGATTCAGCCCATACCTCGGAGGAGAGTTTGACCTATTCACCACCCCCAAGTCTCTGCCCCGTGCCTTCCTGTGTCCTGTTCTGCCCCCACCTCCCCTTCTTGAAACTCCAAATTTATCTATCCTTGGTGCACAGAATAGAGCCTGTGGTGTTTGAATGGTGCTGTCATTTTTTTTTCCCAGAGTCTTCCATACTACTTTAATGTTAGAAACCCCCGAGTGTGTGCTGTCTATCCTGAACACTCACCAGCATAATATATTAAGTACCTATTTTCTATATTTTATAATGATAAAATTATACTTAGTGTTGAAGATTTCAGTGCTACAAGTTAATAAATATACTGTTCTTTTTATGTGTGAGCCATATACTTAACTTGTCAAAATTTTAAGTAAGATAATATTCTATGGATGGAAATTCTTTCTTCTTCTCTGTATATGTATATGTACATACAAATCTCTTCCTATATGTATGCATGTATATGTATATGTATATATAACAAAGGTTAAAGAACCATGAAACGTGGGATACCTGTTTCCTCTCCCCTACCTTTGAGAAGCACTTCCCCAAAAAAGTCACATTGTGCCTTTTTCACTCTAGCTCCTGGGCACATAATGAGGTGTGGAAGACGCTTTAGTCTCTCATTTCACACCATAGTACTAACACTGTTGAGTTTAAGCCTACACTTAAGGTTTACACAGTCAAGCATTTGGATGGGAGAGGGGCAGGAGAGCTTGTAGAGTTGCCTTTTATACCCCAAGCCCTCCCCACCATAGGGCATATTACTTTGCTTACATTTTCTCTCAGTCATGAAGGCCATTCTTTCTTCACCTATTTATGGTTCCTTTTCTGAGTGATCCTGAATGGACATGTGATCAGGCCTTCTAGCGGGAAATCCATAAGGAATCTGTCAGGGCTTCCTGATGAGGGTAGGAGAACCTTATCTGGCATTAAGGTGCTTTAAGCTTTTGCCTAATGCACTGTGTGAGGTGGAGACTGCTACCGTCTAGCCGCATGGAGGCATCTTCACATCCCCTTTTTTAAGAATTCTAGCAGCTTTCATGAATTATTCTTTGATTACATTTGCTCTGATCATAAGACATTTGAGATGATATCAGATAAATACAAGTGATGAGGGGCTGAGTATGTTAAGAAGTGAACCTATTTCTCCTTCCT
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
TGCTCTGATCATAAGACATTTGAGA
58.12
GCTCAGAGCCTCGTGAGTAC
59.9
161
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
ACATTTGCTCTGATCATAAGACA
56
GCTCAGAGCCTCGTGAGTAC
59.9
166
PCR template sequence:
ATTACATTTGCTCTGATCATAAGACATTTGAGATGATATCAGATAAATACAAGTGATGAGGGGCTGAGTATGTTAAGAAGTGAACCTATTTCTCCTTCCTGTAAGTACTGTTTCTACCCTATTAAAATGTAAGGTATTTGAACCACTAGGTACTCACGAGGCTCTGAGCATCAGTGGTATTTAATATTCAAGTAGTAACT
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
22
Interacting miRNAs (#binding sites)
mmu-miR-466d-3p(3), mmu-miR-124-3p(2), mmu-miR-29b-3p(2), mmu-miR-29a-3p(2), mmu-miR-29c-3p(2), mmu-miR-342-3p(2), mmu-miR-669d-5p(2), mmu-miR-140-5p(1), mmu-miR-16-5p(1), mmu-miR-15a-5p(1), mmu-miR-7b-5p(1), mmu-miR-322-5p(1), mmu-miR-152-3p(1), mmu-miR-148b-3p(1), mmu-miR-148a-3p(1), mmu-miR-138-5p(1), mmu-miR-381-3p(1), mmu-miR-541-5p(1), mmu-miR-297a-5p(1), mmu-miR-383-5p(1), mmu-miR-377-3p(1), mmu-miR-452-3p(1)
siRNAs for circular RNA silencing
Junction sequence
ATTTCTCCTTCCTGTAAGTACTGTTT
siRNA sets
AAACAGTACTTACAGGAAG, ACAGTACTTACAGGAAGGA, AACAGTACTTACAGGAAGG
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.886841175
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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