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mmu_ciAcaca_1542
Basic information of circular RNA
PanCircBase ID:
mmu_ciAcaca_1542
mm39_Chr. Position ID:
chr11|84105116|84106658|+
Gene name:
Acaca
Transcript:
ENSMUST00000103201.8
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
4
Exon/intron offsets:
0
Genomic length:
1542
Exon/intron sizes in nt:
1542
Flanking exon/introns:
chr11:84105116-84106659
Splice length:
1542
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTAAGTTAAACTTACTAAACTATTTCGCTTGAAGTATGTGAGATTTCATGCCTAGATTTGTTGTTTCTGTTCAAAAGGATATTTAGGTTTTTAGGGACTTTGCCTTTTTATGCAGGGCTATCCTTTCTGTCTCCCTAGCATGTTACTAATACATAATCTCACTGTGTACCTGTGTTTTTACATATACACACATATGTAATACACACACACACACACACATATTAGTGATGGTAATTTGGTCATAGTTGATAAGGAATTGAAACTCTGCTTCTAATGTTCTTTTTGAAAGATCTTGTGGGTTTTTGCTTGTTTTTTGGTGTGTGTGTGTGTGTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCAGGGCTTCTCTGTATATCTCTGGCTGTCCTAGGACTCACTCTATAGATCAGGCTAGCCTTGAGTTTAAGAGATCCACCCACTTCCTCCTCCCATTTTAATCTGCTGGGATTAAAGCTTGTACCACCATCACCACCCGGAGATCTTGTGGTTTTACGGGCAGAGCTTCTTTAGCCTGGCAGGGAGGGTTTAAGGAATAATTGGTTACCTTGTATAGTGCCAGTGAGAAGATAAATGTGATAGCACTGGATTTAAAGAAGCAGAGGGAGTTTCAGAAGAGAAGGCTGACAGACTTAGGGTTTACTGGCTCTTACCAGGTATTTGAGATGTTTAGAGAAAATATACCACATAGATGTCAGGTGGTTTGTAGCACTTAGGAGCTGGACGTAGGGAGATCAAGGGTTTGTGGCTTATGTAATGAAACTCTTTGTGTTGTCATTTTCCCCTGTCAACCCCTTCCTCCCCCCCAAAGCAGTTCTGTGTCATTGTAATCTAAAACTTGTCACAACTGGGGAATATCTTGGTTGAAATAGATTAAACTATAAGGACCAGTATTCCTACTCCTAAAAGTATTGCTTCATCACTGTCTTATATTTTGTTAATAAAGGTCGATTATATACCTATTAGCCTGTGAGGTATTCAGGGATATGATTGCAAGACATACCTAAGAAGATGGAAGGCTTATTTACAGAAAACTTTTCAGGAATATTTGATTTTTTAAAAATTTTTCTTGTGACTGTGAAGCTGAGCAGTTTCTTTCACTCTGAAGCACTCTGAGTTCAGCACTTTGGAAAACAGCAATTGATGCCATGATCTCTTATTACAATAGAGAATAGTGTAGAACACCACGCAGTGTAACCTTCCTCCATTTCTTATTACATATATATTATGTTTCTTCATAATAGATATTTATAATTGAATTATTTACAAATAAATAATGTGGGTGTATGATTTAATGTTTTTAGGAAATGAAGTTTGAAAGTTAATTAGTTCTAGCTAGCAGGTGTTGCAATATTGCTTGATCTTGTAGGAGTTGTTTCTCAGCAACTTGGCCTAGCAACATTTCTTGCTTGAACAAAGGGAGATATGTAAAAATGTATCCTTGTTTTTCTATCTTTGCCTTTCTTGGCTACCTTTTCTTCCATTTCCCATTTCATATCCCTACCTCCCA
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
TCCTTGTTTTTCTATCTTTGCCT
56.35
TGAACAGAAACAACAAATCTAGGCA
59.41
145
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
TCCTTGTTTTTCTATCTTTGCCT
56.35
ACAGAAACAACAAATCTAGGCATGA
59.23
142
PCR template sequence:
TGAACAAAGGGAGATATGTAAAAATGTATCCTTGTTTTTCTATCTTTGCCTTTCTTGGCTACCTTTTCTTCCATTTCCCATTTCATATCCCTACCTCCCAGTAAGTTAAACTTACTAAACTATTTCGCTTGAAGTATGTGAGATTTCATGCCTAGATTTGTTGTTTCTGTTCAAAAGGATATTTAGGTTTTTAGGGACTT
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
24
Interacting miRNAs (#binding sites)
mmu-miR-466d-3p(2), mmu-miR-466a-5p(2), mmu-miR-1187(2), mmu-miR-466p-5p(2), mmu-miR-466b-3p(2), mmu-miR-20b-5p(1), mmu-miR-106a-5p(1), mmu-miR-93-5p(1), mmu-miR-20a-5p(1), mmu-miR-17-5p(1), mmu-miR-200b-3p(1), mmu-let-7e-5p(1), mmu-let-7b-5p(1), mmu-miR-26a-5p(1), mmu-let-7c-5p(1), mmu-miR-211-5p(1), mmu-miR-204-5p(1), mmu-miR-106b-5p(1), mmu-miR-511-3p(1), mmu-miR-98-5p(1), mmu-miR-705(1), mmu-miR-690(1), mmu-miR-670-5p(1), mmu-miR-574-5p(1)
siRNAs for circular RNA silencing
Junction sequence
TCCCTACCTCCCAGTAAGTTAAACTT
siRNA sets
AAGTTTAACTTACTGGGAG, AGTTTAACTTACTGGGAGG, TTAACTTACTGGGAGGTAG
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.914434873
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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