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mmu_ciAbcc8_642
Basic information of circular RNA
PanCircBase ID:
mmu_ciAbcc8_642
mm39_Chr. Position ID:
chr7|45771639|45772281|-
Gene name:
Abcc8
Transcript:
ENSMUST00000210655.2
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
7
Exon/intron offsets:
0
Genomic length:
642
Exon/intron sizes in nt:
642
Flanking exon/introns:
chr7:45771613-45772281
Splice length:
642
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTTAGTGGCAGCCTCTCCTGTCCCCTGCCCCCATGTTCCCACTGTGTCCTGAGGTCCTTCTCGGGAAGCATGAATGATGGAACAGAACAAAGGAAAGGGCTGAAGAGCTTCAAGTAGTATGAAATTGTGAGGACCATTGTCCTGTGTTGTGTGACTTCTCCTGGGAAAGCATAGAGAAATCTCTGTTCATCCCAGATAGGGCAGCAATGTCAGACTAAAAGGCAGTTCCCCCAAAGTCTGTCTTCGTGAACCCATGAGTCTGTTGGGGTTAATTACAGGAGTATGAGTGACTCAAAGGCAGCTATATATCCCAAAGTCCACTGCAGCAACCTGTGCAACTCACTGCAGTTTAGCAATTGCTTCTGCTGATAAAACCATGGGGAAGGCCCTATGAATCTTGTAAGTTTCAGGAGCTTTTTGAACCTTGTGAGTTTGCCTTAGTTCATGAATACCATGTGGTTCCTTAGCTCCCTGAGTCTTATAAGTCTCCTTCCTTCATCCAGGAGAGAACAGTTCAGTTTGGAGGAGCATTTACACAGAATTCTGGCTGATGGGAGAGGTCAGCCACTCCAAGCTGGGGGATAACTACATCTCTTCATTGAGCCCCAAGTGCATAGTGAGAACCTGAAGGGCTGAGGGCAT
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
GAGAGGTCAGCCACTCCAAG
59.75
CCTCAGGACACAGTGGGAAC
59.96
142
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
GAGAGGTCAGCCACTCCAAG
59.75
ACCTCAGGACACAGTGGGAA
60.4
143
PCR template sequence:
TCTGGCTGATGGGAGAGGTCAGCCACTCCAAGCTGGGGGATAACTACATCTCTTCATTGAGCCCCAAGTGCATAGTGAGAACCTGAAGGGCTGAGGGCATGTTAGTGGCAGCCTCTCCTGTCCCCTGCCCCCATGTTCCCACTGTGTCCTGAGGTCCTTCTCGGGAAGCATGAATGATGGAACAGAACAAAGGAAAGGGC
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
1
Interacting miRNAs (#binding sites)
mmu-miR-22-3p(1)
siRNAs for circular RNA silencing
Junction sequence
GGGCTGAGGGCATGTTAGTGGCAGCC
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.77227265
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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