top of page
mmu_ci0610010K14Rik_44
Basic information of circular RNA
PanCircBase ID:
mmu_ci0610010K14Rik_44
mm39_Chr. Position ID:
chr11|70128041|70128085|-
Gene name:
0610010K14Rik
Transcript:
ENSMUST00000148878.9
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
1
Exon/intron offsets:
0
Genomic length:
44
Exon/intron sizes in nt:
44
Flanking exon/introns:
chr11:70127037-70128085
Splice length:
44
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTAAGGCCCCTACTTGTTTCATTGGTTTCCGTTGGGTTGTTTAT
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
NA
NA
NA
NA
NA
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
NA
NA
NA
NA
NA
PCR template sequence:
TGGTTTCCGTTGGGTTGTTTATGTAAGGCCCCTACTTGTTTCAT
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
1
Interacting miRNAs (#binding sites)
mmu-miR-191-5p(1)
siRNAs for circular RNA silencing
Junction sequence
TTGGGTTGTTTATGTAAGGCCCCTAC
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.982326965
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
bottom of page