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mmu_ciZfp51_1584
Basic information of circular RNA
PanCircBase ID:
mmu_ciZfp51_1584
mm39_Chr. Position ID:
chr17|21682049|21683633|+
Gene name:
Zfp51
Transcript:
ENSMUST00000039577.8
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
4
Exon/intron offsets:
0
Genomic length:
1584
Exon/intron sizes in nt:
1584
Flanking exon/introns:
chr17:21682049-21683633
Splice length:
1584
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTGAGAACATTTTGCTTTAGGAACTATCAACTCTTCTTTTATATGTACTGACTTTATACACAGTAAAAGTCTTTGTTAAAGCTCTTTGGAAACAACATGAGAATAGAAAAATTTGGACAGTAGAAAAGAACTTTTCATGATATTTGATATTTGCTTTCCATTTTGAACTTTAGAACTCTCATGGATGCTTTATTTTGTTTCCACAATGTAATCAGCAATATTTATCTTCATCTCTTAGAGTTCCATGTTTATCATTATAATTACATGGTTCTAACTGTGGAAAAAATAACTTAAGATATGCAAAATGAAATTTCTCCCTAAACATGGTGACAATTCTGACAGGAAATAGCAATTGGGAATCCATTCCTGGATTCTTCTATTTTGTGTTGTCTTTATGTACTGAGGAGAGTACTGTCTTAGACATCTGTATTCTTTCTAAAAATTGTAGCATGGGTCAACCTCACAAATCTCATAGATTATTGTATACACTGTAGGCCTGGTTACCTATCTGGAGCAAATGAGTTTTCCCTGGAAGGTGGAGAGGAGAGAGGAGCCATAACTAGGGTAGGCTAGTAAGTGAGCAGAACAACTGGGAAGGATTCACATGAAAGAGAACAAGAAGGAAAATACTTCTTCTGCATTCAGTTCCACTTGAAATGATTCCCAATCATTTAGCTTATTATAATATCCTCGCCCCAGATGCATCCTGCTCATTGTAACTGTTAAAAGACGTTGGTGACTTTCTTCACCTGAATTGTGGCCACTTAATACTAGTATAAAATGCAATTTTACTTGACTATGCTGATATCAGATTGTTTACTTAACAAAATTATGTGTGTAGCATGAGTCCATGAAGTAGCGTTATTCTGCAATTGCCTTCCTTTACATCCTTCATTTTCGTCTATGGAGAAAACACAGAAGAAGCCTTTCTGCAAGACGATCCCAAGAAGCAGTGTCCTATGTAAGCTTAAGAACATCCCTCTAAGGGAAGTTAAGAAACACAGCAGTGTGTAGCTCAGACAATGGAGGAAAACAATAAGCAATAGCTGCCCATGACAGCCCTACTTCAAATGATCTAGACGCTAGGCTCTGTATTCAAGATATCTGGCAAAGTACTCTCTTTGCTTCCATTATTTTTGAGAAATCTGTTATGGTATTTTTAGAAAAAAAAATGTTAACCCTTTGATTTTACGTAGGCCTTTAATATTAGAAGGATTGGGGTCTTCTGAACTGTACATTTCGTTGAACACAAACACTATGAACCTGGATTGTGTTACACTCTTTTTCATCAATTTTTGAATAGAGACGATCAGTCAGTAAGCTTCATCCCAAAGGTAATTACTGACTCAAGTATTTGATCCATCTTGAGCCATCAAACATTTTCCATGAGATGCCATGTCTATTATATATTACAGACCCTTGAAAGCTGTCAGGATATGTTTGTGGTAATCCATAAAATTACGATGAAGGAAACATGTCTAAGTAGTTGCTGTCTGACTTAAGCGAGAACATAGGGAGACAGTCATTTATCAAATGTTTAATCATAGAACAAGCCCTATTAATCTGAATTATATTCATTTTCAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
GCGAGAACATAGGGAGACAGT
59.25
TGTTGTTTCCAAAGAGCTTTAACA
57.73
179
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
AGCGAGAACATAGGGAGACAG
58.97
TGTTGTTTCCAAAGAGCTTTAACA
57.73
180
PCR template sequence:
AGTTGCTGTCTGACTTAAGCGAGAACATAGGGAGACAGTCATTTATCAAATGTTTAATCATAGAACAAGCCCTATTAATCTGAATTATATTCATTTTCAGGTGAGAACATTTTGCTTTAGGAACTATCAACTCTTCTTTTATATGTACTGACTTTATACACAGTAAAAGTCTTTGTTAAAGCTCTTTGGAAACAACATGA
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
13
Interacting miRNAs (#binding sites)
mmu-miR-137-3p(1), mmu-miR-221-3p(1), mmu-miR-135a-5p(1), mmu-miR-101a-3p(1), mmu-miR-298-5p(1), mmu-miR-143-3p(1), mmu-miR-30b-5p(1), mmu-miR-149-5p(1), mmu-miR-431-5p(1), mmu-miR-411-3p(1), mmu-miR-224-5p(1), mmu-miR-384-3p(1), mmu-miR-539-5p(1)
siRNAs for circular RNA silencing
Junction sequence
TATTCATTTTCAGGTGAGAACATTTT
siRNA sets
AAAATGTTCTCACCTGAAA, AATGTTCTCACCTGAAAAT, ATGTTCTCACCTGAAAATG
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.880091178
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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