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mmu_ciTsr1_358
Basic information of circular RNA
PanCircBase ID:
mmu_ciTsr1_358
mm39_Chr. Position ID:
chr11|74792474|74792832|+
Gene name:
Tsr1
Transcript:
ENSMUST00000155702.8
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
5
Exon/intron offsets:
0
Genomic length:
358
Exon/intron sizes in nt:
358
Flanking exon/introns:
chr11:74792474-74792834
Splice length:
358
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTCAGTGACAGCAAGCTCGTCACCTTCCTGACTTTAATTCTGTATGCTCTTTACCTGGTCGACGGTCACATGCTTCTAGGGCTGGATGAGGAAGTGACTGAAGTTTAAATACCGAATGGCTGCACTAAGCAAACACTGAGTACAGCTCTGTTTCCTCTAGAAATCACCCCAGGCTTGTCTCTTTACATAATAAATGACATTAGGCCCACTGCAGGGTTTATTTAGCTGTGTCTTTGTCTTAAATGTGAGGCGGCTGGGTTAAAATTGGAAGAAGTCTATGTTCTCGTGTAGCTGCTGTCTTTCATGTTGGTAGCAGTGCCTGCATAGGTAAGAATACTAAAAATTGTTTGTACTTTTC
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
TGTTCTCGTGTAGCTGCTGT
59.33
GTCACTTCCTCATCCAGCCC
60.11
178
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
TCATGTTGGTAGCAGTGCCT
59.31
GTCACTTCCTCATCCAGCCC
60.11
155
PCR template sequence:
TTAAAATTGGAAGAAGTCTATGTTCTCGTGTAGCTGCTGTCTTTCATGTTGGTAGCAGTGCCTGCATAGGTAAGAATACTAAAAATTGTTTGTACTTTTCGTCAGTGACAGCAAGCTCGTCACCTTCCTGACTTTAATTCTGTATGCTCTTTACCTGGTCGACGGTCACATGCTTCTAGGGCTGGATGAGGAAGTGACTG
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
1
Interacting miRNAs (#binding sites)
mmu-miR-134-5p(1)
siRNAs for circular RNA silencing
Junction sequence
GTTTGTACTTTTCGTCAGTGACAGCA
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.832851373
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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