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mmu_ciTasor2_130
Basic information of circular RNA
PanCircBase ID:
mmu_ciTasor2_130
mm39_Chr. Position ID:
chr13|3617305|3617435|-
Gene name:
Tasor2
Transcript:
ENSMUST00000096069.5
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
18
Exon/intron offsets:
0
Genomic length:
130
Exon/intron sizes in nt:
130
Flanking exon/introns:
chr13:3617032-3617435
Splice length:
130
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTAAATATAAGCTAAATTGTAATCTTCACTACTCAGTTAATGCTACCCCAGGACAGCTGTAGAAATATCCTTCCTAATTAGTTATTGAATGCCTTAGCTAGTAGCATGTGTTTTGACAAATGCTTGTAAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
TCCTTCCTAATTAGTTATTGAATGCCT
58.5
TTCTACAGCTGTCCTGGGGT
60.18
127
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
TCCTTCCTAATTAGTTATTGAATGCC
57.31
TTCTACAGCTGTCCTGGGGT
60.18
127
PCR template sequence:
TATCCTTCCTAATTAGTTATTGAATGCCTTAGCTAGTAGCATGTGTTTTGACAAATGCTTGTAAGGTAAATATAAGCTAAATTGTAATCTTCACTACTCAGTTAATGCTACCCCAGGACAGCTGTAGAAA
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
NA
Interacting miRNAs (#binding sites)
NA
siRNAs for circular RNA silencing
Junction sequence
AAATGCTTGTAAGGTAAATATAAGCT
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.815566936
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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