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mmu_ciSlc7a2_2665
Basic information of circular RNA
PanCircBase ID:
mmu_ciSlc7a2_2665
mm39_Chr. Position ID:
chr8|41358764|41361429|+
Gene name:
Slc7a2
Transcript:
ENSMUST00000057784.15
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
6
Exon/intron offsets:
0
Genomic length:
2665
Exon/intron sizes in nt:
2665
Flanking exon/introns:
chr8:41358764-41361434
Splice length:
2665
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTACACTGCGCTGCCCTTGGGACTGGGGCCCTGAGGGGGTCTTGCAAAGTGTAGTCAAGTGGCTTCAGAGTTGCTCTTGTGGGATGTGGGGATAGTTCAGTGGTAGAATGCTTGACCTGAGCTCTGAAGGCCCTGGCGCCTGAGCCACTGCAACCACAAGATTGATTCTGTATATTCTAAAAATATCCCAACATGAGGAACACATTAACAGCTATGTACTCAAAGAATAATTTACCCAGAACTGCTGTCTAGAAACTTTGAGTGATTACAAAAACATGGTCATTGTCAGCTATTTTTCCCCCAAGATAATGATGGTATAAGCTTTGGTAATAATATACATAGCATTGGGACATATGAGGGTCTGTGTCACACATAACCACATATTATGGTAGACACCTTTAGGGTGCCTATGCAGCTGACATCAGTCTCACCTGCATTGTTTGTGTCAGTTGGAAACTATATGCAGACTTGACACTTTGGATAATTCTCCATGAAGCAATAGTGTGTCTGGGAGTAGAAGCCATGTGCTGTGTCATTTTTTTTTTTAAACCCTAAATGTGCTTCTAACTGTGACAAGCTTATCCCCTCTCCTTTAAGGGCTGATCAGAATGGAATATATTTAAAAAAAAAACAGAATTACCATTCTGAAATTACCAGCGGTAATTCTGTATGTAAAAAGACAAGGGAATTTGAATGTCAAATGTTCAGATTTTTCCGTAGCTACTTATTTACTATGACGCAGCTCATAGCTCAGGTCTCCAGAAACCTCATATGTCTATTAACATATCTGTCTAGTTAACATATCTGAAGCGGAACACCTCATGCAGGCCACACATCATAGCAGAATATTCTCACAAAAGAAAAGCTTTTTTTTTTTTTTTGCCTGAGCATTCCTTTTTATAAATTAGAAATAATTTTCAAAAGTTTGAAGCTAGGAAAAAATTTTAGTATGATTCATCAACATGGCTTTTTTTTTTTTATTATTTCAAAGATGTTTCTAGTTTCTAGTCCCAATAATACTAAGTGAGTTTAGGGATTACTTTTTTGGGTTTCTCAGAAATCTGCTGTTTGTGAGATTCATTAAGAAGAATTCCAGACAGTTGTAGTCCAAACTGTAAAGCCAGTGTGTCCCCATGATCTTTGAGGGGGGTGAAAAGATCCCCTATGGCTACATCAGCTGTTGATGCATAGCGTGCTACCATGATTGGTCCTTACACATTATATAGTTTGAATTTTGGAAACTGTAGTTATGCTGTCAAGTTTGGAAAAAAAATTTCTCAGTTAATTCTGTTGAGTTGGCATTGTACAGAGACCAACAGCCATATTGGTCTAGAAATGCTGGACTTATTTTTTCCATTTGTGCAAGCATTACACACTGTATTAAATCTGTATGGTCTTATCTATCTATGTAGGTTCAATGACAAAAATAATAAAGTCTTCTCTAAGTAATGGAAAAAAAAGGATAAAGAAAATGGATATTTTGGGAGACAAGGTCTTGCTGTGTAGCCACAGTTGAGCTGGTAGTCACTGGGAAGACCAGGCTATCCTCAAACATTCAGCAATCACCTGGCTCAGCCTCTCAGTCGTTGGGGTTTCAGGCATGAAGCACCATGCTAGCCCCCCACTCCCCAAATAGGATTTTAAAGACAAGTACATTACCTCTTGTTGTTAAATGCTTTCATAACTGAATATTAAGTAGAATGACACGAACAATAAACATAAATAATTCAATTTATCTTAAGCAAAAATCGCATACTGAACCTCATTGTTACTAACACTTAACTGTAGCTCCTTCTATATGCTAAACCTATAATATGTTCAATTTTTAAGCCATTTTTTGACTTGATAATTTTAATGCTTAAAACTATTACATATACCAAAGAGCAATCTATAGGATGCAAAATCATGGTAATATGAAAATATGTAATCACTGCATAAATGGGTGGCTTACTGTGGCATAAAACTGATTGATCTTTTTAATTTCCTGGTAATTTGGGAATTCTGTTTTCTGAATTATTAACCCTAAGACATTTTAGTGGTTGACCATTTAATTTTGCAAAGTCTAATTCATTTTTAATTCAGTAGCCATCATTGATAGAAACAAATGACTTGCAATGCTGTCTTTGGTCTTTTAATTTGGTTGGGCAAGTAAAGAGTAACACGTGGCCATTACTGGCAGGTATGTTTACATACCCAACAGTAGTGACCTTTAAGATCATGTGAGTCCCGGCTGTCATGTAGCATGTTATACGATCACTGTGTCTCTATTCTGGGTGCGGTCTTGCATGGATGTGTTTGCCATACTGCATGTCTTTGCTTTTTACTCAGTCTTCTTGGATCCATTTTCCCAATGCCTCGTGTAATCTATGCTATGGCGGAGGATGGGTTGCTTTTCAAATGTCTAGCTCAAATCAATTCCAAAACGAAGACACCAGTAATTGCTACTTTGTCGTCGGGTGCAGTGGCAGGTGAGAGAGTTGACTTTTACTAAGAAAAGGGGGATCATTTTTCATCAAGAACTCTGGAAATGTGGACAGGTGTTTTTCTGTTGAGTTTAACATAAAGTTCAATATCTTTGTGCCTTTCCTGTTTTTATGGCTTTGTGTACCTGTAAGTATCCTTGGAGAATAATACTCAACTCACGTTGGATTATGAATTTTTCTGT
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
GTGCCTTTCCTGTTTTTATGGCT
59.99
ACACTTTGCAAGACCCCCTC
60.18
140
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
GTGCCTTTCCTGTTTTTATGGCT
59.99
CCCACATCCCACAAGAGCAA
60.25
178
PCR template sequence:
TTCAATATCTTTGTGCCTTTCCTGTTTTTATGGCTTTGTGTACCTGTAAGTATCCTTGGAGAATAATACTCAACTCACGTTGGATTATGAATTTTTCTGTGTACACTGCGCTGCCCTTGGGACTGGGGCCCTGAGGGGGTCTTGCAAAGTGTAGTCAAGTGGCTTCAGAGTTGCTCTTGTGGGATGTGGGGATAGTTCAG
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
26
Interacting miRNAs (#binding sites)
mmu-miR-1187(2), mmu-miR-190b-5p(2), mmu-miR-124-3p(1), mmu-miR-9-5p(1), mmu-miR-23b-3p(1), mmu-miR-7b-5p(1), mmu-miR-221-3p(1), mmu-miR-135a-5p(1), mmu-miR-30e-5p(1), mmu-miR-335-5p(1), mmu-miR-30a-5p(1), mmu-miR-30c-5p(1), mmu-miR-7a-5p(1), mmu-miR-222-3p(1), mmu-miR-23a-3p(1), mmu-miR-139-5p(1), mmu-miR-30d-5p(1), mmu-miR-30b-5p(1), mmu-miR-191-5p(1), mmu-miR-153-3p(1), mmu-miR-384-3p(1), mmu-miR-466a-5p(1), mmu-miR-1198-5p(1), mmu-miR-466p-5p(1), mmu-miR-539-5p(1), mmu-miR-335-3p(1)
siRNAs for circular RNA silencing
Junction sequence
TGAATTTTTCTGTGTACACTGCGCTG
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.854208837
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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