top of page
mmu_ciSlc12a2_628
Basic information of circular RNA
PanCircBase ID:
mmu_ciSlc12a2_628
mm39_Chr. Position ID:
chr18|58030491|58031119|+
Gene name:
Slc12a2
Transcript:
ENSMUST00000115366.3
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
3
Exon/intron offsets:
0
Genomic length:
628
Exon/intron sizes in nt:
628
Flanking exon/introns:
chr18:58030491-58031130
Splice length:
628
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTAAGGGAAGCTTTACACACTTGATCTTTACACACTTGATCTTTACACACTTGATCTTTACACACTTGATCTGTGTGAAAACAGTTGCATGCCTGTCTACAAGTGTTGACTGAGTTGTGTTGCCCTTTAGGTAGATTGCTACCATAATTGACTTCCATAATTTTGATTTTCTCAAAAATGAGATTAAAATTAGGTAATTTATTGCCTGTGCCTTAGTTACTTACCTATTTCCATGAAGAAATATCATGACCGAGGCAGCTAATAAAAGAAAGCATTTAATTGAGGGCTTGGTTATAGTTTTGGAGAGTGAGCCTGTGACCTTGATGGTGGGGAACATGGCAGCAAGCATGACCTGGGGCAGTGGCTGAGCTTACATTGCATGATTCACATGCAGAGCACTATGAGAGTGAGACCTTAAAGCCCATCCTCCAACAAGCCCACATCTGCCAACCCTTCCCACATAGTCCACCAGCTAGAACCAAACATTCAGATATGCGAGCCTATGGGGCCTTTCTCATTCAGAACACCAGTCCATGATGTTACTTCAGGGTTTAGCCCGCCCAGCCAGGTCTAGGCAATGACAGATTTAGGAGTATAAGGTTCTTAGTTGTTTTTGTTTTTGTTTTTT
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
CCAGGTCTAGGCAATGACAGA
59.17
AGGCATGCAACTGTTTTCACA
59.24
158
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
CCAGGTCTAGGCAATGACAGA
59.17
ACAGGCATGCAACTGTTTTCA
59.24
160
PCR template sequence:
AGTCCATGATGTTACTTCAGGGTTTAGCCCGCCCAGCCAGGTCTAGGCAATGACAGATTTAGGAGTATAAGGTTCTTAGTTGTTTTTGTTTTTGTTTTTTGTAAGGGAAGCTTTACACACTTGATCTTTACACACTTGATCTTTACACACTTGATCTTTACACACTTGATCTGTGTGAAAACAGTTGCATGCCTGTCTAC
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
5
Interacting miRNAs (#binding sites)
mmu-miR-124-3p(1), mmu-miR-138-5p(1), mmu-miR-324-3p(1), mmu-miR-484(1), mmu-miR-296-3p(1)
siRNAs for circular RNA silencing
Junction sequence
GTTTTTGTTTTTTGTAAGGGAAGCTT
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.86099602
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
bottom of page