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mmu_circTpr_3011
Basic information of circular RNA
PanCircBase ID:
mmu_circTpr_3011
mm39_Chr. Position ID:
chr1|150290166|150308367|+
Gene name:
Tpr
Transcript:
ENSMUST00000124973.9
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
19
Exon/intron indexes:
17,18,19,20,21,22,23,24,25,26,27,28,29,30,31,32,33,34,35
Exon/intron offsets:
0,250,1653,2966,3532,5422,7220,8112,8641,9070,9381,10247,11221,12447,13704,14919,16145,16746,17995
Genomic length:
18201
Exon/intron sizes in nt:
13,41,49,16,31,35,14,10,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,000
Flanking exon/introns:
chr1:150289558-150290166|chr1:150308367-150308569
Splice length:
3011
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
CTTCAAGTTTAGATGATATTTCTCTTCTCTCAACTCCAAAACGTTCAAGTACATCACAGACTGTTTCCACTCCTGCTCCGGAACCCGTCATTGACTCCACAGAGGCTATAGAAGCAAAGGCTGCCCTTAAACAGTTGCAGGAAATCTTTGAGAACTATAAAAAAGAAAAAATAGACAGTGAGAAACTTCAAAATGAGCAGCTAGAGAAACTTCAAGAGCAAGTCACAGACCTGCGCTCACAAAACACCAAAATTTCTACTCAGCTAGATTTTGCTTCTAAACGTTATGAAATGCTGCAAGATAATGTAGAAGGATATCGTCGAGAAATAACATCTCTACAAGAGAGAAATCAGAAACTCACTGCAACTACTCAGAAGCAGGAACAGATCATCAACACAATGACGCAAGACTTGAGAGGAGCCAATGAAAAGCTAGCAGTTGCAGAAGTAAGAGCAGAAAATTTAAAGAAGGAAAAAGAAATGCTTAAATTGTCTGAAGTCCGTCTTTCTCAGCAAAGAGAGTCTTTGTTAGCTGAACAGAGGGGGCAGAACTTGTTGCTGACTAATCTACAGACAATCCAGGGCATACTAGAGCGATCTGAGACTGAAACCAAACAAAGGCTGAATAGCCAGATAGAAAAACTGGAGCATGAGATCTCTCACTTGAAGAAGAAATTGGAAAACGAGGTGGAACAAAGACATACGCTTACGAGGAATCTAGACGTTCAACTATTAGATACCAAGAGACAGCTAGATACAGAAATAAATCTCCATCTTAACACAAAAGAACTGTTAAAAAATGCTCAGAAGGACATTGCTACACTGAAACAGCACCTTAATAATATGGAAGCCCAGCTCGCTTCACAGTCCACACAGAGAACCGGTAAAGGTCAGCCTGGTGACAGAGATGACGTTGATGATCTTAAAAGTCAGCTAAGGCAGGCTGAAGAACAGGTCAATGACTTGAAGGAGAGACTCAAGACAAGTACCAGTAATGTGGAGCAGTATCGAGCCATGGTGACCAGCTTAGAAGATTCCCTGAACAAGGAGAAACAGGTGACTGAGGAGGTTCATAAGAACATTGAAGTTCGCTTGAAAGAATCAGCAGAGTTTCAGACACAGTTGGAGAAGAAATTGATGGAAGTAGAGAAGGAAAAGCAAGAACTTCAGGATGATAAGAGGAAAGCCATCGAGAGCATGGAACAGCAATTAAGTGAATTGAAGAAAACACTGTCTACTGTTCAGAATGAAGTACAAGAAGCTCTTCAGAGAGCAAGCACAGCTTTAAGTAATGAACAGCAAGCCAGGCGTGACTGTCAGGAACAAGCTAAAATCGCTGTGGAAGCCCAGAATAAGTATGAGAGAGAATTGATGCTACATGCTGCTGATGTCGAAGCTCTGCAAGCTGCCAAGGAACAGGTTTCAAAAATGACATCAATCCGTCAGCATTTGGAAGAAACAACTCAGAAAGCAGAATCCCAGTTGTTGGAATGTAAAGCATCTTGGGAAGAGAGAGAGAGAGTGTTGAAGGATGAAGTTTCCAAAAGTGTGTCTCGCTGTGAAGATCTAGAGAAACAAAACCGACTACTTCATGATCAAATCGAAAAATTAAGTGACAAGGTGGTCACCTCTATGAAGGATGCTGTGCAAGCGCCATTAAATGTATCTCTCAATGAAGAAGGGAAATCTCAAGAACAAATTCTAGAAATTCTTAGATTTATTCGACGAGAAAAAGAAATTGCTGAAACTAGGTTTGAGGTGGCTCAGGTTGAGAGTTTGCGGTATCGACAAAGAGTTGAACTTCTAGAACGGGAGTTGCAAGAACTGCAGGATAGCCTGAATGTGGAAAGGGAAAAGGTGCAGGTAACTGCAAAAACAATGGCGCAACATGAAGAGCTGATGAAGAAAACTGAAACAATGAACGTTGTTATGGAGACCAACAAGATGCTACGGGAGGAAAAGGAAAGGCTCGAACAGAACCTACAACAAATGCAAGCCAAGGTGAGGAAACTGGAGTTAGACATTTTACCCTTACAAGAAGCCAATGCTGAGCTGAGTGAGAAAAGCGGTATGCTCCAGGCAGAAAAGAAGCTACTGGAAGAGGATGTTAAGCGTTGGAAAGCACGGAACCAGCAACTAATAAATCAACAGAAAGATCCAGACACAGAAGAATATCGAAAGTTGCTTTCTGAAAAGGAAATTCACACTAAGAGAATCCAACAGCTAAATGAAGAAGTTGGAAGGCTTAAGGCTGAAATTGCAAGATCAAATGCATCCTTGACTAACAACCAGAATTTAATCCAGAGTCTGCGGGAAGACTTAAGTAAAGCACGGACTGAAAAGGAAGGCATTCAGAAAGATTTAGATGCCAAAATAATTGATATACAGGAAAAGGTCAAAACAATCACTCAAGTCAAGAAAATTGGACGCAGGTACAAGACTCAGTTTGAAGAACTGAAAGCGCAACAAAACAAGGCCATGGAGACTTCCACTCAGTCTTCAGGAGACCATCAGGAACAGCACATCTCTGTCCAGGAAATGCAGGAGCTCAAAGATACCCTCAGCCAATCCGAAACAAAGACAAAGTCACTTGAGGGTCAAGTAGAGAATCTGCAGAAGACATTATCTGAAAAAGAGACAGAAGCAAGAAGTCTCCAGGAGCAGACGGTGCAGCTTCAGTCTGAACTGTCACGCCTTCGTCAGGACCTCCAGGATAAAACCACAGAGGAGCAGCTCCGACAGCAAATGAATGAAAAGACTTGGAAGACACTTGCACTAGCCAAATCAAAAATTACACATCTATCTGGTGTGAAAGATCAGCTGACTAAAGAAATTGAAGAACTTAAACAAAGGAACGGAGCTCTAGATCAGCAGAAAGATGAGCTTGATGTCCGAATGACTGCTCTTAAGTCCCAGTATGAAGGTCGGATTAGTCGCTTAGAGAGAGAGCTCAGAGAGCATCAAGAGCGACACCTTGAGCAGAGGGATGAGCCTCAAGAACCCACTAATAAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
GAGCATCAAGAGCGACACCT
60.11
TGGAGTCAATGACGGGTTCC
59.68
156
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
AGAGCATCAAGAGCGACACC
60.11
TGGAGTCAATGACGGGTTCC
59.68
157
PCR template sequence:
CCAGTATGAAGGTCGGATTAGTCGCTTAGAGAGAGAGCTCAGAGAGCATCAAGAGCGACACCTTGAGCAGAGGGATGAGCCTCAAGAACCCACTAATAAGCTTCAAGTTTAGATGATATTTCTCTTCTCTCAACTCCAAAACGTTCAAGTACATCACAGACTGTTTCCACTCCTGCTCCGGAACCCGTCATTGACTCCAC
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
26
Interacting miRNAs (#binding sites)
mmu-miR-181b-5p(2), mmu-miR-335-3p(2), mmu-miR-181d-5p(2), mmu-let-7a-5p(1), mmu-miR-16-5p(1), mmu-miR-181a-5p(1), mmu-miR-103-3p(1), mmu-let-7b-5p(1), mmu-miR-221-3p(1), mmu-miR-135a-5p(1), mmu-let-7c-5p(1), mmu-miR-18a-5p(1), mmu-miR-203-3p(1), mmu-miR-326-3p(1), mmu-miR-363-3p(1), mmu-miR-125a-5p(1), mmu-miR-676-3p(1), mmu-miR-301b-3p(1), mmu-miR-218-5p(1), mmu-miR-107-3p(1), mmu-miR-301a-3p(1), mmu-miR-29b-2-5p(1), mmu-miR-129-5p(1), mmu-miR-5101(1), mmu-miR-697(1), mmu-miR-1904(1)
siRNAs for circular RNA silencing
Junction sequence
ACCCACTAATAAGCTTCAAGTTTAGA
siRNA sets
CTTGAAGCTTATTAGTGGG, AAACTTGAAGCTTATTAGT, AACTTGAAGCTTATTAGTG
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCTPR_3011_ORF_1
1.2096
0.224666391
0.999999975
2733
ORF sequence:
ATGCTGCAAGATAATGTAGAAGGATATCGTCGAGAAATAACATCTCTACAAGAGAGAAATCAGAAACTCACTGCAACTACTCAGAAGCAGGAACAGATCATCAACACAATGACGCAAGACTTGAGAGGAGCCAATGAAAAGCTAGCAGTTGCAGAAGTAAGAGCAGAAAATTTAAAGAAGGAAAAAGAAATGCTTAAATTGTCTGAAGTCCGTCTTTCTCAGCAAAGAGAGTCTTTGTTAGCTGAACAGAGGGGGCAGAACTTGTTGCTGACTAATCTACAGACAATCCAGGGCATACTAGAGCGATCTGAGACTGAAACCAAACAAAGGCTGAATAGCCAGATAGAAAAACTGGAGCATGAGATCTCTCACTTGAAGAAGAAATTGGAAAACGAGGTGGAACAAAGACATACGCTTACGAGGAATCTAGACGTTCAACTATTAGATACCAAGAGACAGCTAGATACAGAAATAAATCTCCATCTTAACACAAAAGAACTGTTAAAAAATGCTCAGAAGGACATTGCTACACTGAAACAGCACCTTAATAATATGGAAGCCCAGCTCGCTTCACAGTCCACACAGAGAACCGGTAAAGGTCAGCCTGGTGACAGAGATGACGTTGATGATCTTAAAAGTCAGCTAAGGCAGGCTGAAGAACAGGTCAATGACTTGAAGGAGAGACTCAAGACAAGTACCAGTAATGTGGAGCAGTATCGAGCCATGGTGACCAGCTTAGAAGATTCCCTGAACAAGGAGAAACAGGTGACTGAGGAGGTTCATAAGAACATTGAAGTTCGCTTGAAAGAATCAGCAGAGTTTCAGACACAGTTGGAGAAGAAATTGATGGAAGTAGAGAAGGAAAAGCAAGAACTTCAGGATGATAAGAGGAAAGCCATCGAGAGCATGGAACAGCAATTAAGTGAATTGAAGAAAACACTGTCTACTGTTCAGAATGAAGTACAAGAAGCTCTTCAGAGAGCAAGCACAGCTTTAAGTAATGAACAGCAAGCCAGGCGTGACTGTCAGGAACAAGCTAAAATCGCTGTGGAAGCCCAGAATAAGTATGAGAGAGAATTGATGCTACATGCTGCTGATGTCGAAGCTCTGCAAGCTGCCAAGGAACAGGTTTCAAAAATGACATCAATCCGTCAGCATTTGGAAGAAACAACTCAGAAAGCAGAATCCCAGTTGTTGGAATGTAAAGCATCTTGGGAAGAGAGAGAGAGAGTGTTGAAGGATGAAGTTTCCAAAAGTGTGTCTCGCTGTGAAGATCTAGAGAAACAAAACCGACTACTTCATGATCAAATCGAAAAATTAAGTGACAAGGTGGTCACCTCTATGAAGGATGCTGTGCAAGCGCCATTAAATGTATCTCTCAATGAAGAAGGGAAATCTCAAGAACAAATTCTAGAAATTCTTAGATTTATTCGACGAGAAAAAGAAATTGCTGAAACTAGGTTTGAGGTGGCTCAGGTTGAGAGTTTGCGGTATCGACAAAGAGTTGAACTTCTAGAACGGGAGTTGCAAGAACTGCAGGATAGCCTGAATGTGGAAAGGGAAAAGGTGCAGGTAACTGCAAAAACAATGGCGCAACATGAAGAGCTGATGAAGAAAACTGAAACAATGAACGTTGTTATGGAGACCAACAAGATGCTACGGGAGGAAAAGGAAAGGCTCGAACAGAACCTACAACAAATGCAAGCCAAGGTGAGGAAACTGGAGTTAGACATTTTACCCTTACAAGAAGCCAATGCTGAGCTGAGTGAGAAAAGCGGTATGCTCCAGGCAGAAAAGAAGCTACTGGAAGAGGATGTTAAGCGTTGGAAAGCACGGAACCAGCAACTAATAAATCAACAGAAAGATCCAGACACAGAAGAATATCGAAAGTTGCTTTCTGAAAAGGAAATTCACACTAAGAGAATCCAACAGCTAAATGAAGAAGTTGGAAGGCTTAAGGCTGAAATTGCAAGATCAAATGCATCCTTGACTAACAACCAGAATTTAATCCAGAGTCTGCGGGAAGACTTAAGTAAAGCACGGACTGAAAAGGAAGGCATTCAGAAAGATTTAGATGCCAAAATAATTGATATACAGGAAAAGGTCAAAACAATCACTCAAGTCAAGAAAATTGGACGCAGGTACAAGACTCAGTTTGAAGAACTGAAAGCGCAACAAAACAAGGCCATGGAGACTTCCACTCAGTCTTCAGGAGACCATCAGGAACAGCACATCTCTGTCCAGGAAATGCAGGAGCTCAAAGATACCCTCAGCCAATCCGAAACAAAGACAAAGTCACTTGAGGGTCAAGTAGAGAATCTGCAGAAGACATTATCTGAAAAAGAGACAGAAGCAAGAAGTCTCCAGGAGCAGACGGTGCAGCTTCAGTCTGAACTGTCACGCCTTCGTCAGGACCTCCAGGATAAAACCACAGAGGAGCAGCTCCGACAGCAAATGAATGAAAAGACTTGGAAGACACTTGCACTAGCCAAATCAAAAATTACACATCTATCTGGTGTGAAAGATCAGCTGACTAAAGAAATTGAAGAACTTAAACAAAGGAACGGAGCTCTAGATCAGCAGAAAGATGAGCTTGATGTCCGAATGACTGCTCTTAAGTCCCAGTATGAAGGTCGGATTAGTCGCTTAGAGAGAGAGCTCAGAGAGCATCAAGAGCGACACCTTGAGCAGAGGGATGAGCCTCAAGAACCCACTAATAAGCTTCAAGTTTAG
Peptide sequence:
MLQDNVEGYRREITSLQERNQKLTATTQKQEQIINTMTQDLRGANEKLAVAEVRAENLKKEKEMLKLSEVRLSQQRESLLAEQRGQNLLLTNLQTIQGILERSETETKQRLNSQIEKLEHEISHLKKKLENEVEQRHTLTRNLDVQLLDTKRQLDTEINLHLNTKELLKNAQKDIATLKQHLNNMEAQLASQSTQRTGKGQPGDRDDVDDLKSQLRQAEEQVNDLKERLKTSTSNVEQYRAMVTSLEDSLNKEKQVTEEVHKNIEVRLKESAEFQTQLEKKLMEVEKEKQELQDDKRKAIESMEQQLSELKKTLSTVQNEVQEALQRASTALSNEQQARRDCQEQAKIAVEAQNKYERELMLHAADVEALQAAKEQVSKMTSIRQHLEETTQKAESQLLECKASWEERERVLKDEVSKSVSRCEDLEKQNRLLHDQIEKLSDKVVTSMKDAVQAPLNVSLNEEGKSQEQILEILRFIRREKEIAETRFEVAQVESLRYRQRVELLERELQELQDSLNVEREKVQVTAKTMAQHEELMKKTETMNVVMETNKMLREEKERLEQNLQQMQAKVRKLELDILPLQEANAELSEKSGMLQAEKKLLEEDVKRWKARNQQLINQQKDPDTEEYRKLLSEKEIHTKRIQQLNEEVGRLKAEIARSNASLTNNQNLIQSLREDLSKARTEKEGIQKDLDAKIIDIQEKVKTITQVKKIGRRYKTQFEELKAQQNKAMETSTQSSGDHQEQHISVQEMQELKDTLSQSETKTKSLEGQVENLQKTLSEKETEARSLQEQTVQLQSELSRLRQDLQDKTTEEQLRQQMNEKTWKTLALAKSKITHLSGVKDQLTKEIEELKQRNGALDQQKDELDVRMTALKSQYEGRISRLERELREHQERHLEQRDEPQEPTNKLQV
IRESfinder result
IRESfinder score
0.479225493
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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