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mmu_circTaok2_690
Basic information of circular RNA
PanCircBase ID:
mmu_circTaok2_690
mm39_Chr. Position ID:
chr7|126477894|126479835|-
Gene name:
Taok2
Transcript:
ENSMUST00000071268.11
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
7
Exon/intron indexes:
8,7,6,5,4,3,2
Exon/intron offsets:
0,197,468,684,1329,1525,1774
Genomic length:
1941
Exon/intron sizes in nt:
92,11,49,74,61,02,72,100
Flanking exon/introns:
chr7:126475291-126477894|chr7:126479835-126483077
Splice length:
690
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GCAAGATCCCAATCTCAGGGCCCCCTGGGGCCATCATGCCAGCTGGGGGCCGGGCCGGGAGCCTGAAGGACCCTGATGTGGCTGAGCTCTTCTTCAAGGATGACCCTGAGAAGCTCTTCTCTGACCTCCGGGAGATCGGCCATGGCAGCTTTGGAGCAGTGTACTTTGCCCGGGATGTCCGGAACAGTGAGGTGGTGGCCATCAAGAAGATGTCCTATAGTGGGAAGCAATCAAATGAGAAATGGCAGGATATCATCAAGGAAGTGCGGTTCTTACAGAAGCTACGGCATCCTAATACCATTCAGTACCGGGGCTGTTACCTGAGGGAGCACACAGCTTGGCTGGTGATGGAGTATTGCCTGGGCTCAGCTTCTGATCTTCTAGAAGTGCACAAGAAACCCCTGCAGGAGGTAGAGATTGCAGCTGTGACCCATGGGGCTCTTCAGGGCCTGGCATATCTACACTCACACAACATGATCCATAGAGATGTGAAGGCTGGAAACATCTTGCTGTCAGAACCAGGCTTGGTAAAACTGGGGGACTTTGGCTCTGCGTCAATCATGGCACCTGCCAACTCTTTTGTGGGTACTCCATACTGGATGGCTCCAGAGGTGATCCTAGCCATGGATGAGGGACAATATGATGGCAAAGTGGATGTCTGGTCCTTGGGGATAACCTGTATTGAGCTAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
TGGATGGCTCCAGAGGTGAT
60.33
CATCAGGGTCCTTCAGGCTC
59.82
172
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
GATGGCTCCAGAGGTGATCC
59.6
CATCAGGGTCCTTCAGGCTC
59.82
170
PCR template sequence:
CCATACTGGATGGCTCCAGAGGTGATCCTAGCCATGGATGAGGGACAATATGATGGCAAAGTGGATGTCTGGTCCTTGGGGATAACCTGTATTGAGCTAGGCAAGATCCCAATCTCAGGGCCCCCTGGGGCCATCATGCCAGCTGGGGGCCGGGCCGGGAGCCTGAAGGACCCTGATGTGGCTGAGCTCTTCTTCAAGGA
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
8
Interacting miRNAs (#binding sites)
mmu-miR-23b-3p(1), mmu-miR-351-5p(1), mmu-miR-22-3p(1), mmu-miR-383-5p(1), mmu-miR-1187(1), mmu-miR-673-5p(1), mmu-miR-335-3p(1), mmu-miR-484(1)
siRNAs for circular RNA silencing
Junction sequence
TGTATTGAGCTAGGCAAGATCCCAAT
siRNA sets
TCTTGCCTAGCTCAATACA, ATCTTGCCTAGCTCAATAC
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCTAOK2_690_ORF_1
1.1833
0.369573179
0.999706965
1344
ORF sequence:
ATGCCAGCTGGGGGCCGGGCCGGGAGCCTGAAGGACCCTGATGTGGCTGAGCTCTTCTTCAAGGATGACCCTGAGAAGCTCTTCTCTGACCTCCGGGAGATCGGCCATGGCAGCTTTGGAGCAGTGTACTTTGCCCGGGATGTCCGGAACAGTGAGGTGGTGGCCATCAAGAAGATGTCCTATAGTGGGAAGCAATCAAATGAGAAATGGCAGGATATCATCAAGGAAGTGCGGTTCTTACAGAAGCTACGGCATCCTAATACCATTCAGTACCGGGGCTGTTACCTGAGGGAGCACACAGCTTGGCTGGTGATGGAGTATTGCCTGGGCTCAGCTTCTGATCTTCTAGAAGTGCACAAGAAACCCCTGCAGGAGGTAGAGATTGCAGCTGTGACCCATGGGGCTCTTCAGGGCCTGGCATATCTACACTCACACAACATGATCCATAGAGATGTGAAGGCTGGAAACATCTTGCTGTCAGAACCAGGCTTGGTAAAACTGGGGGACTTTGGCTCTGCGTCAATCATGGCACCTGCCAACTCTTTTGTGGGTACTCCATACTGGATGGCTCCAGAGGTGATCCTAGCCATGGATGAGGGACAATATGATGGCAAAGTGGATGTCTGGTCCTTGGGGATAACCTGTATTGAGCTAGGCAAGATCCCAATCTCAGGGCCCCCTGGGGCCATCATGCCAGCTGGGGGCCGGGCCGGGAGCCTGAAGGACCCTGATGTGGCTGAGCTCTTCTTCAAGGATGACCCTGAGAAGCTCTTCTCTGACCTCCGGGAGATCGGCCATGGCAGCTTTGGAGCAGTGTACTTTGCCCGGGATGTCCGGAACAGTGAGGTGGTGGCCATCAAGAAGATGTCCTATAGTGGGAAGCAATCAAATGAGAAATGGCAGGATATCATCAAGGAAGTGCGGTTCTTACAGAAGCTACGGCATCCTAATACCATTCAGTACCGGGGCTGTTACCTGAGGGAGCACACAGCTTGGCTGGTGATGGAGTATTGCCTGGGCTCAGCTTCTGATCTTCTAGAAGTGCACAAGAAACCCCTGCAGGAGGTAGAGATTGCAGCTGTGACCCATGGGGCTCTTCAGGGCCTGGCATATCTACACTCACACAACATGATCCATAGAGATGTGAAGGCTGGAAACATCTTGCTGTCAGAACCAGGCTTGGTAAAACTGGGGGACTTTGGCTCTGCGTCAATCATGGCACCTGCCAACTCTTTTGTGGGTACTCCATACTGGATGGCTCCAGAGGTGATCCTAGCCATGGATGAGGGACAATATGATGGCAAAGTGGATGTCTGGTCCTTGGGGATAACCTGTATTGAGCTA
Peptide sequence:
MPAGGRAGSLKDPDVAELFFKDDPEKLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREHTAWLVMEYCLGSASDLLEVHKKPLQEVEIAAVTHGALQGLAYLHSHNMIHRDVKAGNILLSEPGLVKLGDFGSASIMAPANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELGKIPISGPPGAIMPAGGRAGSLKDPDVAELFFKDDPEKLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREHTAWLVMEYCLGSASDLLEVHKKPLQEVEIAAVTHGALQGLAYLHSHNMIHRDVKAGNILLSEPGLVKLGDFGSASIMAPANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIEL
IRESfinder result
IRESfinder score
0.271532315
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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