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mmu_circTank_464
Basic information of circular RNA
PanCircBase ID:
mmu_circTank_464
mm39_Chr. Position ID:
chr2|61443994|61459716|+
Gene name:
Tank
Transcript:
ENSMUST00000141544.8
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
4
Exon/intron indexes:
2,3,4,5
Exon/intron offsets:
0,13255,14070,15634
Genomic length:
15722
Exon/intron sizes in nt:
148,109,119,88
Flanking exon/introns:
chr2:61423552-61443994|chr2:61459716-61474058
Splice length:
464
Other database IDs:
CIRCpedia: MMU_CIRCpedia_25082, circAtlas: mmu-Tank_0008
Human Ortholog IDs:
Mature spliced Sequence:
AGCTGGCATTCCTACCATCCTTTATAGTGATGCTACAGGACAAAGAGGAATGGATAAAAACATTGGTGAGCAACTCAATAGAGCATATGAAGCCTTCCGACAGGCATGCATGGATAGAGATTCAGCAGTAAGAGAGCTACAGCAAAAGACTGAGAACTATGAACAAAGAATACGCGAGCAACAGGAACAGCTGTCATTTCAACAAAACCTAATTGACAGGCTGAAATCACAGCTACTTCTCGTGGATTCTAGTCGAGATAACAGTTATGGCTATGTACCTTTGCTTGAAGACAGTGACAGAAGGAAGAATAATTTGACCCTTGATGAACCACATGATAAAGTGAAACTAGGAACACTGAGAGATAAGCAATCAAAGCTTATTTCCAAAGAATTAATAATGCTGCACCAATTGTACTGTATTTGTGGACAGACCATGGAACAAGGTCTAAAGAAATAATCTCTGG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
TGCTGCACCAATTGTACTGT
58.02
TCGGAAGGCTTCATATGCTCT
58.96
166
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
TGCTGCACCAATTGTACTGT
58.02
TGCTCTATTGAGTTGCTCACCA
59.7
151
PCR template sequence:
AAGCAATCAAAGCTTATTTCCAAAGAATTAATAATGCTGCACCAATTGTACTGTATTTGTGGACAGACCATGGAACAAGGTCTAAAGAAATAATCTCTGGAGCTGGCATTCCTACCATCCTTTATAGTGATGCTACAGGACAAAGAGGAATGGATAAAAACATTGGTGAGCAACTCAATAGAGCATATGAAGCCTTCCGA
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
2
Interacting miRNAs (#binding sites)
mmu-miR-103-3p(1), mmu-miR-107-3p(1)
siRNAs for circular RNA silencing
Junction sequence
AAATAATCTCTGGAGCTGGCATTCCT
siRNA sets
AATGCCAGCTCCAGAGATT
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.616060998
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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