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mmu_circStau2_67
Basic information of circular RNA
PanCircBase ID:
mmu_circStau2_67
mm39_Chr. Position ID:
chr1|16579565|16579632|-
Gene name:
Stau2
Transcript:
ENSMUST00000162751.8
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
1
Exon/intron indexes:
2
Exon/intron offsets:
0
Genomic length:
67
Exon/intron sizes in nt:
67
Flanking exon/introns:
chr1:16556374-16579565|chr1:16579632-16589396
Splice length:
67
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
TTTTGTGGAGCTGTGAGGGATACGGAAGTTTGATCAATATTGTCTTAACATGCTTCAGATAAATCAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
CAATATTGTCTTAACATGCTTCAGA
55.95
ACTTCCGTATCCCTCACAGC
59.18
62
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
CAATATTGTCTTAACATGCTTCAGA
55.95
CTTCCGTATCCCTCACAGCTC
59.93
61
PCR template sequence:
CAATATTGTCTTAACATGCTTCAGATAAATCAGTTTTGTGGAGCTGTGAGGGATACGGAAGTTTGA
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
1
Interacting miRNAs (#binding sites)
mmu-miR-673-5p(1)
siRNAs for circular RNA silencing
Junction sequence
TCAGATAAATCAGTTTTGTGGAGCTG
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.718533436
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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