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mmu_circSrcap_2475
Basic information of circular RNA
PanCircBase ID:
mmu_circSrcap_2475
mm39_Chr. Position ID:
chr7|127118752|127131391|+
Gene name:
Srcap
Transcript:
ENSMUST00000186672.7
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
13
Exon/intron indexes:
4,5,6,7,8,9,10,11,12,13,14,15,16
Exon/intron offsets:
0,1895,2408,5712,6050,8815,9554,10602,10859,11313,11754,12139,12446
Genomic length:
12639
Exon/intron sizes in nt:
25,21,86,14,12,23,27,50,00,00,00,00,00,00,00,00,00,000
Flanking exon/introns:
chr7:127115373-127118752|chr7:127131391-127133719
Splice length:
2475
Other database IDs:
CIRCpedia: MMU_CIRCpedia_37101, circAtlas: mmu-Srcap_0015
circAtlas: hsa-SRCAP_0004, CIRCpedia: HSA_CIRCpedia_130228
Human Ortholog IDs:
Mature spliced Sequence:
ATGGTGTCGGACGGCATGACAGGCAGCAATCCTGTGTCTCCTGCCTCATCTAGTTCTCCAGATTCTAGTGGGGCAGGAGGCATCTCCCCCCAACATATAGCTCAAGATTCCTCACTGGATGGACCTCCAGGCCCACAAGATGGTACCACAGTTCCTCTGGAGGGGTTCAGCTTATCCCATGCTGCTGACCTGGTCAACAGGGGTCAGAAGTGGGAGAAGAGCCATGCAGAAATTGCAGAGCAAGCCAAACATGAAGCTGAAATTGAAACTCGGATTGCTGAACTTCGGAAGGAGGGATTCTGGTCATTGAAAAGGCTACCTAAAGTGCCAGAGCCTCCCCGCCCTAAAGGACACTGGGACTATCTGTGTGAAGAGATGCAGTGGCTCTCTGCTGACTTTGCTCAGGAACGCAGATGGAAACGAGGTGTGGCCCGGAAGGTGGTACGTATGGTGATCCGGCACCATGAAGAGCAGCGACAAAAGGAGGAGCGAGCTCGGAGAGAGGAACAGGCCAAGCTGCGCCGAATTGCTTCTACCATGGCCAAGGATGTTAGGCAGTTCTGGAGCAATGTGGAGAAGGTGGTACAATTCAAACAACAGTCTCGGCTTGAAGAAAAACGTAAGAAAGCCTTGGACCTGCACCTGGACTTCATTGTAGGGCAAACTGAGAAGTACTCAGACCTTCTGTCTCAGAGCCTTAACCAGCCACCGGCCTCCAGCAAAGCTGGCTCCTCCCCTTGCCTTGGTTCTTCCTCAGCAGCATCCAGTCCTCCACCCCCGGTTTCTCGACTGGATGATGAAGATGGGGACTTTCAACCCCAAGAGGAAGAAGAGGAAGATGATGAGGAGACCATTGAGGTTGAAGAACAACAGGAAGGCAATGATGCAGAGACCCAGAGGCGTGAGATTGAACTTCTTCGACATGAGGGAGAACTGCCACTGGAAGAGCTGCTCCGTTCCCTCCCTCCTCAGTTATTGGGTGGGCCTTTTAGCCCCTCTCAAACACCTTCTCATGACAGTGATACCCAGGATGGGCCTGAAGAAAATATTGAAGAGGAGCCATCTCAGGATTTAGAGGTACACCCTCCATCTTCCGCTGTCACACAATGTAACAAGCAGCGTTGGCATCCAGATGAAGATGATGAAGAGTTTACTGCTAATGAAGATGAAGCAGAGGATGAAGAGGACACTATAGCAGCTGAAGAGCAGTTGGAAGGGGAGGTGGACCATGCCATGGAACTGAGCGAATTGGCTCGAGAAGGTGAACTGTCTATGGAGGAGCTACTGCAGCAATATGCAGGGGCCTATGCCTGTGATGCCTCTGCTCCAGCCTCAGGGGATAGTGAAGATGAAGATGAAGTTGAAGCCAATAGCTCTGATGGTGAACTAGAGGAAACAGTTGAAGAGGCAGCTCAAGAAGACAGTAGCAGTCAGTCGGATTCTGCTGAGGAGTGTAGTGAGGATGAGGAAGATGAACATTCAGAGGAAGAAATGAGTGGGAGTTCACAGTCGGAAGAATCTGAGTCTGATGAGTCGGAGGATGCTCAGTCCCAGAGCCAAGCAGATGAAGAACAAGATGATGAGGGAGAGGATGATGATGTTGATGATGACGATGATGATGGTTTTGGAGTAGAGTACTTGCTTGCCCGGGATGATGAAAGGAGTGAGGTTGATGGGGGCAGTGGACCTCCCACCCCCGGTCCTACGACCACTCTAGGGCCCAAGAAAGAAATTACTGATATTGCTGCAGCAGCTGAAAGTCTCCAGCCCAAGGGTTATACTTTGGCTACTACCCAGGTGAAGACACCTATTCCGCTACTCCTTCGGGGCCAGCTCCGAGAGTACCAACACATTGGCCTTGACTGGCTGGTTACTATGTATGAGAAGAAGCTGAATGGCATTCTTGCAGATGAGATGGGACTAGGAAAGACAATCCAGACCATCTCCTTGCTTGCTCACTTGGCCTGTGAGAAAGGTAACTGGGGTCCCCATTTAATCATTGTTCCGACCAGCGTGATGTTGAATTGGGAGATGGAATTGAAACGTTGGTGCCCGAGTTTTAAAATCCTTACTTACTATGGAGCTCAGAAAGAGAGAAAGCTCAAGCGGCAGGGCTGGACCAAGCCCAATGCTTTCCATGTGTGTATCACGTCTTACAAGCTGGTACTGCAAGATCACCAGGCTTTTCGTCGTAAGAACTGGCGGTATCTTATTCTGGATGAGGCTCAGAACATCAAGAATTTCAAGTCCCAACGATGGCAGTCACTGCTCAACTTTAACAGCCAGAGGCGCCTGCTCCTGACAGGAACTCCCTTGCAGAATAGCCTCATGGAGCTGTGGTCCTTGATGCATTTTTTGATGCCACATGTCTTCCAGTCTCACCGAGAATTCAAGGAGTGGTTTTCTAACCCTCTAACTGGCATGATTGAAGGAAGCCAAGAATATAATGAAGGTCTAGTCAAACGCCTCCACAAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
TCACCGAGAATTCAAGGAGTGG
60.03
GCAGGAGACACAGGATTGCT
60.04
141
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
ACCGAGAATTCAAGGAGTGGT
59.02
GATGAGGCAGGAGACACAGG
59.82
145
PCR template sequence:
GTCTCACCGAGAATTCAAGGAGTGGTTTTCTAACCCTCTAACTGGCATGATTGAAGGAAGCCAAGAATATAATGAAGGTCTAGTCAAACGCCTCCACAAGATGGTGTCGGACGGCATGACAGGCAGCAATCCTGTGTCTCCTGCCTCATCTAGTTCTCCAGATTCTAGTGGGGCAGGAGGCATCTCCCCCCAACATATAG
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
17
Interacting miRNAs (#binding sites)
mmu-miR-326-3p(2), mmu-miR-362-5p(2), mmu-miR-7b-5p(1), mmu-miR-103-3p(1), mmu-miR-7a-5p(1), mmu-miR-196a-5p(1), mmu-miR-709(1), mmu-miR-22-3p(1), mmu-miR-370-3p(1), mmu-miR-324-3p(1), mmu-miR-107-3p(1), mmu-miR-705(1), mmu-miR-207(1), mmu-miR-5101(1), mmu-miR-335-3p(1), mmu-miR-697(1), mmu-miR-146b-5p(1)
siRNAs for circular RNA silencing
Junction sequence
ACGCCTCCACAAGATGGTGTCGGACG
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCSRCAP_2475_ORF_1
1.1542
0.327951138
1
4950
ORF sequence:
ATGGTGTCGGACGGCATGACAGGCAGCAATCCTGTGTCTCCTGCCTCATCTAGTTCTCCAGATTCTAGTGGGGCAGGAGGCATCTCCCCCCAACATATAGCTCAAGATTCCTCACTGGATGGACCTCCAGGCCCACAAGATGGTACCACAGTTCCTCTGGAGGGGTTCAGCTTATCCCATGCTGCTGACCTGGTCAACAGGGGTCAGAAGTGGGAGAAGAGCCATGCAGAAATTGCAGAGCAAGCCAAACATGAAGCTGAAATTGAAACTCGGATTGCTGAACTTCGGAAGGAGGGATTCTGGTCATTGAAAAGGCTACCTAAAGTGCCAGAGCCTCCCCGCCCTAAAGGACACTGGGACTATCTGTGTGAAGAGATGCAGTGGCTCTCTGCTGACTTTGCTCAGGAACGCAGATGGAAACGAGGTGTGGCCCGGAAGGTGGTACGTATGGTGATCCGGCACCATGAAGAGCAGCGACAAAAGGAGGAGCGAGCTCGGAGAGAGGAACAGGCCAAGCTGCGCCGAATTGCTTCTACCATGGCCAAGGATGTTAGGCAGTTCTGGAGCAATGTGGAGAAGGTGGTACAATTCAAACAACAGTCTCGGCTTGAAGAAAAACGTAAGAAAGCCTTGGACCTGCACCTGGACTTCATTGTAGGGCAAACTGAGAAGTACTCAGACCTTCTGTCTCAGAGCCTTAACCAGCCACCGGCCTCCAGCAAAGCTGGCTCCTCCCCTTGCCTTGGTTCTTCCTCAGCAGCATCCAGTCCTCCACCCCCGGTTTCTCGACTGGATGATGAAGATGGGGACTTTCAACCCCAAGAGGAAGAAGAGGAAGATGATGAGGAGACCATTGAGGTTGAAGAACAACAGGAAGGCAATGATGCAGAGACCCAGAGGCGTGAGATTGAACTTCTTCGACATGAGGGAGAACTGCCACTGGAAGAGCTGCTCCGTTCCCTCCCTCCTCAGTTATTGGGTGGGCCTTTTAGCCCCTCTCAAACACCTTCTCATGACAGTGATACCCAGGATGGGCCTGAAGAAAATATTGAAGAGGAGCCATCTCAGGATTTAGAGGTACACCCTCCATCTTCCGCTGTCACACAATGTAACAAGCAGCGTTGGCATCCAGATGAAGATGATGAAGAGTTTACTGCTAATGAAGATGAAGCAGAGGATGAAGAGGACACTATAGCAGCTGAAGAGCAGTTGGAAGGGGAGGTGGACCATGCCATGGAACTGAGCGAATTGGCTCGAGAAGGTGAACTGTCTATGGAGGAGCTACTGCAGCAATATGCAGGGGCCTATGCCTGTGATGCCTCTGCTCCAGCCTCAGGGGATAGTGAAGATGAAGATGAAGTTGAAGCCAATAGCTCTGATGGTGAACTAGAGGAAACAGTTGAAGAGGCAGCTCAAGAAGACAGTAGCAGTCAGTCGGATTCTGCTGAGGAGTGTAGTGAGGATGAGGAAGATGAACATTCAGAGGAAGAAATGAGTGGGAGTTCACAGTCGGAAGAATCTGAGTCTGATGAGTCGGAGGATGCTCAGTCCCAGAGCCAAGCAGATGAAGAACAAGATGATGAGGGAGAGGATGATGATGTTGATGATGACGATGATGATGGTTTTGGAGTAGAGTACTTGCTTGCCCGGGATGATGAAAGGAGTGAGGTTGATGGGGGCAGTGGACCTCCCACCCCCGGTCCTACGACCACTCTAGGGCCCAAGAAAGAAATTACTGATATTGCTGCAGCAGCTGAAAGTCTCCAGCCCAAGGGTTATACTTTGGCTACTACCCAGGTGAAGACACCTATTCCGCTACTCCTTCGGGGCCAGCTCCGAGAGTACCAACACATTGGCCTTGACTGGCTGGTTACTATGTATGAGAAGAAGCTGAATGGCATTCTTGCAGATGAGATGGGACTAGGAAAGACAATCCAGACCATCTCCTTGCTTGCTCACTTGGCCTGTGAGAAAGGTAACTGGGGTCCCCATTTAATCATTGTTCCGACCAGCGTGATGTTGAATTGGGAGATGGAATTGAAACGTTGGTGCCCGAGTTTTAAAATCCTTACTTACTATGGAGCTCAGAAAGAGAGAAAGCTCAAGCGGCAGGGCTGGACCAAGCCCAATGCTTTCCATGTGTGTATCACGTCTTACAAGCTGGTACTGCAAGATCACCAGGCTTTTCGTCGTAAGAACTGGCGGTATCTTATTCTGGATGAGGCTCAGAACATCAAGAATTTCAAGTCCCAACGATGGCAGTCACTGCTCAACTTTAACAGCCAGAGGCGCCTGCTCCTGACAGGAACTCCCTTGCAGAATAGCCTCATGGAGCTGTGGTCCTTGATGCATTTTTTGATGCCACATGTCTTCCAGTCTCACCGAGAATTCAAGGAGTGGTTTTCTAACCCTCTAACTGGCATGATTGAAGGAAGCCAAGAATATAATGAAGGTCTAGTCAAACGCCTCCACAAGATGGTGTCGGACGGCATGACAGGCAGCAATCCTGTGTCTCCTGCCTCATCTAGTTCTCCAGATTCTAGTGGGGCAGGAGGCATCTCCCCCCAACATATAGCTCAAGATTCCTCACTGGATGGACCTCCAGGCCCACAAGATGGTACCACAGTTCCTCTGGAGGGGTTCAGCTTATCCCATGCTGCTGACCTGGTCAACAGGGGTCAGAAGTGGGAGAAGAGCCATGCAGAAATTGCAGAGCAAGCCAAACATGAAGCTGAAATTGAAACTCGGATTGCTGAACTTCGGAAGGAGGGATTCTGGTCATTGAAAAGGCTACCTAAAGTGCCAGAGCCTCCCCGCCCTAAAGGACACTGGGACTATCTGTGTGAAGAGATGCAGTGGCTCTCTGCTGACTTTGCTCAGGAACGCAGATGGAAACGAGGTGTGGCCCGGAAGGTGGTACGTATGGTGATCCGGCACCATGAAGAGCAGCGACAAAAGGAGGAGCGAGCTCGGAGAGAGGAACAGGCCAAGCTGCGCCGAATTGCTTCTACCATGGCCAAGGATGTTAGGCAGTTCTGGAGCAATGTGGAGAAGGTGGTACAATTCAAACAACAGTCTCGGCTTGAAGAAAAACGTAAGAAAGCCTTGGACCTGCACCTGGACTTCATTGTAGGGCAAACTGAGAAGTACTCAGACCTTCTGTCTCAGAGCCTTAACCAGCCACCGGCCTCCAGCAAAGCTGGCTCCTCCCCTTGCCTTGGTTCTTCCTCAGCAGCATCCAGTCCTCCACCCCCGGTTTCTCGACTGGATGATGAAGATGGGGACTTTCAACCCCAAGAGGAAGAAGAGGAAGATGATGAGGAGACCATTGAGGTTGAAGAACAACAGGAAGGCAATGATGCAGAGACCCAGAGGCGTGAGATTGAACTTCTTCGACATGAGGGAGAACTGCCACTGGAAGAGCTGCTCCGTTCCCTCCCTCCTCAGTTATTGGGTGGGCCTTTTAGCCCCTCTCAAACACCTTCTCATGACAGTGATACCCAGGATGGGCCTGAAGAAAATATTGAAGAGGAGCCATCTCAGGATTTAGAGGTACACCCTCCATCTTCCGCTGTCACACAATGTAACAAGCAGCGTTGGCATCCAGATGAAGATGATGAAGAGTTTACTGCTAATGAAGATGAAGCAGAGGATGAAGAGGACACTATAGCAGCTGAAGAGCAGTTGGAAGGGGAGGTGGACCATGCCATGGAACTGAGCGAATTGGCTCGAGAAGGTGAACTGTCTATGGAGGAGCTACTGCAGCAATATGCAGGGGCCTATGCCTGTGATGCCTCTGCTCCAGCCTCAGGGGATAGTGAAGATGAAGATGAAGTTGAAGCCAATAGCTCTGATGGTGAACTAGAGGAAACAGTTGAAGAGGCAGCTCAAGAAGACAGTAGCAGTCAGTCGGATTCTGCTGAGGAGTGTAGTGAGGATGAGGAAGATGAACATTCAGAGGAAGAAATGAGTGGGAGTTCACAGTCGGAAGAATCTGAGTCTGATGAGTCGGAGGATGCTCAGTCCCAGAGCCAAGCAGATGAAGAACAAGATGATGAGGGAGAGGATGATGATGTTGATGATGACGATGATGATGGTTTTGGAGTAGAGTACTTGCTTGCCCGGGATGATGAAAGGAGTGAGGTTGATGGGGGCAGTGGACCTCCCACCCCCGGTCCTACGACCACTCTAGGGCCCAAGAAAGAAATTACTGATATTGCTGCAGCAGCTGAAAGTCTCCAGCCCAAGGGTTATACTTTGGCTACTACCCAGGTGAAGACACCTATTCCGCTACTCCTTCGGGGCCAGCTCCGAGAGTACCAACACATTGGCCTTGACTGGCTGGTTACTATGTATGAGAAGAAGCTGAATGGCATTCTTGCAGATGAGATGGGACTAGGAAAGACAATCCAGACCATCTCCTTGCTTGCTCACTTGGCCTGTGAGAAAGGTAACTGGGGTCCCCATTTAATCATTGTTCCGACCAGCGTGATGTTGAATTGGGAGATGGAATTGAAACGTTGGTGCCCGAGTTTTAAAATCCTTACTTACTATGGAGCTCAGAAAGAGAGAAAGCTCAAGCGGCAGGGCTGGACCAAGCCCAATGCTTTCCATGTGTGTATCACGTCTTACAAGCTGGTACTGCAAGATCACCAGGCTTTTCGTCGTAAGAACTGGCGGTATCTTATTCTGGATGAGGCTCAGAACATCAAGAATTTCAAGTCCCAACGATGGCAGTCACTGCTCAACTTTAACAGCCAGAGGCGCCTGCTCCTGACAGGAACTCCCTTGCAGAATAGCCTCATGGAGCTGTGGTCCTTGATGCATTTTTTGATGCCACATGTCTTCCAGTCTCACCGAGAATTCAAGGAGTGGTTTTCTAACCCTCTAACTGGCATGATTGAAGGAAGCCAAGAATATAATGAAGGTCTAGTCAAACGCCTCCACAAG
Peptide sequence:
MVSDGMTGSNPVSPASSSSPDSSGAGGISPQHIAQDSSLDGPPGPQDGTTVPLEGFSLSHAADLVNRGQKWEKSHAEIAEQAKHEAEIETRIAELRKEGFWSLKRLPKVPEPPRPKGHWDYLCEEMQWLSADFAQERRWKRGVARKVVRMVIRHHEEQRQKEERARREEQAKLRRIASTMAKDVRQFWSNVEKVVQFKQQSRLEEKRKKALDLHLDFIVGQTEKYSDLLSQSLNQPPASSKAGSSPCLGSSSAASSPPPPVSRLDDEDGDFQPQEEEEEDDEETIEVEEQQEGNDAETQRREIELLRHEGELPLEELLRSLPPQLLGGPFSPSQTPSHDSDTQDGPEENIEEEPSQDLEVHPPSSAVTQCNKQRWHPDEDDEEFTANEDEAEDEEDTIAAEEQLEGEVDHAMELSELAREGELSMEELLQQYAGAYACDASAPASGDSEDEDEVEANSSDGELEETVEEAAQEDSSSQSDSAEECSEDEEDEHSEEEMSGSSQSEESESDESEDAQSQSQADEEQDDEGEDDDVDDDDDDGFGVEYLLARDDERSEVDGGSGPPTPGPTTTLGPKKEITDIAAAAESLQPKGYTLATTQVKTPIPLLLRGQLREYQHIGLDWLVTMYEKKLNGILADEMGLGKTIQTISLLAHLACEKGNWGPHLIIVPTSVMLNWEMELKRWCPSFKILTYYGAQKERKLKRQGWTKPNAFHVCITSYKLVLQDHQAFRRKNWRYLILDEAQNIKNFKSQRWQSLLNFNSQRRLLLTGTPLQNSLMELWSLMHFLMPHVFQSHREFKEWFSNPLTGMIEGSQEYNEGLVKRLHKMVSDGMTGSNPVSPASSSSPDSSGAGGISPQHIAQDSSLDGPPGPQDGTTVPLEGFSLSHAADLVNRGQKWEKSHAEIAEQAKHEAEIETRIAELRKEGFWSLKRLPKVPEPPRPKGHWDYLCEEMQWLSADFAQERRWKRGVARKVVRMVIRHHEEQRQKEERARREEQAKLRRIASTMAKDVRQFWSNVEKVVQFKQQSRLEEKRKKALDLHLDFIVGQTEKYSDLLSQSLNQPPASSKAGSSPCLGSSSAASSPPPPVSRLDDEDGDFQPQEEEEEDDEETIEVEEQQEGNDAETQRREIELLRHEGELPLEELLRSLPPQLLGGPFSPSQTPSHDSDTQDGPEENIEEEPSQDLEVHPPSSAVTQCNKQRWHPDEDDEEFTANEDEAEDEEDTIAAEEQLEGEVDHAMELSELAREGELSMEELLQQYAGAYACDASAPASGDSEDEDEVEANSSDGELEETVEEAAQEDSSSQSDSAEECSEDEEDEHSEEEMSGSSQSEESESDESEDAQSQSQADEEQDDEGEDDDVDDDDDDGFGVEYLLARDDERSEVDGGSGPPTPGPTTTLGPKKEITDIAAAAESLQPKGYTLATTQVKTPIPLLLRGQLREYQHIGLDWLVTMYEKKLNGILADEMGLGKTIQTISLLAHLACEKGNWGPHLIIVPTSVMLNWEMELKRWCPSFKILTYYGAQKERKLKRQGWTKPNAFHVCITSYKLVLQDHQAFRRKNWRYLILDEAQNIKNFKSQRWQSLLNFNSQRRLLLTGTPLQNSLMELWSLMHFLMPHVFQSHREFKEWFSNPLTGMIEGSQEYNEGLVKRLHK
IRESfinder result
IRESfinder score
0.381525231
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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