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mmu_circSlc38a10_286
Basic information of circular RNA
PanCircBase ID:
mmu_circSlc38a10_286
mm39_Chr. Position ID:
chr11|120023502|120025708|-
Gene name:
Slc38a10
Transcript:
ENSMUST00000045402.14
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
2
Exon/intron indexes:
8,7
Exon/intron offsets:
0,2103
Genomic length:
2206
Exon/intron sizes in nt:
183,103
Flanking exon/introns:
chr11:120020138-120023502|chr11:120025708-120028682
Splice length:
286
Other database IDs:
circBase: mmu_circ_0002828, CIRCpedia: MMU_CIRCpedia_5048, circAtlas: mmu-Slc38a10_0004
circBase: hsa_circ_0046128, circAtlas: hsa-SLC38A10_0011, CIRCpedia: HSA_CIRCpedia_22740
Human Ortholog IDs:
Mature spliced Sequence:
CCAGGTCCTGCCCACCTATGACAGCCTGGACGAGCCATCAGTGAAGACCATGAGCTCCATCTTTGCCTCCTCCCTCAACGTGGTCACCGCCTTCTATGTCATGGTGGGGTTTTTTGGTTACGTCAGCTTCACTGATGCCACCACAGGCAATGTGCTGATCCACTTCCCCTCCAACCCGGTGACAGAGATGATCCGAGTGGGCTTCGTGATGTCTGTGGCTGTGGGCTTCCCCATGATGATTCTGCCGTGCAGGCAGGCCTTGAACACACTGCTGTTTGAGCAGCAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
AGTGGGCTTCGTGATGTCTG
60.04
GGGAGGAGGCAAAGATGGAG
59.82
165
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
AGTGGGCTTCGTGATGTCTG
60.04
GAGGGAGGAGGCAAAGATGG
59.82
167
PCR template sequence:
GATGATCCGAGTGGGCTTCGTGATGTCTGTGGCTGTGGGCTTCCCCATGATGATTCTGCCGTGCAGGCAGGCCTTGAACACACTGCTGTTTGAGCAGCAGCCAGGTCCTGCCCACCTATGACAGCCTGGACGAGCCATCAGTGAAGACCATGAGCTCCATCTTTGCCTCCTCCCTCAACGTGGTCACCGCCTTCTATGTC
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
NA
Interacting miRNAs (#binding sites)
NA
siRNAs for circular RNA silencing
Junction sequence
GTTTGAGCAGCAGCCAGGTCCTGCCC
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCSLC38A10_286_ORF_1
1.2722
0.386607058
0.63456272
258
ORF sequence:
ATGAGCTCCATCTTTGCCTCCTCCCTCAACGTGGTCACCGCCTTCTATGTCATGGTGGGGTTTTTTGGTTACGTCAGCTTCACTGATGCCACCACAGGCAATGTGCTGATCCACTTCCCCTCCAACCCGGTGACAGAGATGATCCGAGTGGGCTTCGTGATGTCTGTGGCTGTGGGCTTCCCCATGATGATTCTGCCGTGCAGGCAGGCCTTGAACACACTGCTGTTTGAGCAGCAGCCAGGTCCTGCCCACCTATGA
Peptide sequence:
MSSIFASSLNVVTAFYVMVGFFGYVSFTDATTGNVLIHFPSNPVTEMIRVGFVMSVAVGFPMMILPCRQALNTLLFEQQPGPAHL
IRESfinder result
IRESfinder score
0.377269363
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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