top of page
mmu_circRnf169_74
Basic information of circular RNA
PanCircBase ID:
mmu_circRnf169_74
mm39_Chr. Position ID:
chr7|99604673|99604747|-
Gene name:
Rnf169
Transcript:
ENSMUST00000080817.6
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
1
Exon/intron indexes:
2
Exon/intron offsets:
0
Genomic length:
74
Exon/intron sizes in nt:
74
Flanking exon/introns:
chr7:99592312-99604673|chr7:99604747-99629178
Splice length:
74
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
AGTTTATATTCAGAACGCCAATCAAGTTAAGCAAGCCGGGAGAACTCAGTGAGGAGTATGGATGCCTGAGAAAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
GTGAGGAGTATGGATGCCTGAG
59.96
GCTTGCTTAACTTGATTGGCG
58.75
62
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
CTCAGTGAGGAGTATGGATGCC
59.96
GCTTGCTTAACTTGATTGGCG
58.75
66
PCR template sequence:
GGGAGAACTCAGTGAGGAGTATGGATGCCTGAGAAAGAGTTTATATTCAGAACGCCAATCAAGTTAAGCAAGCC
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
NA
Interacting miRNAs (#binding sites)
NA
siRNAs for circular RNA silencing
Junction sequence
ATGCCTGAGAAAGAGTTTATATTCAG
siRNA sets
ATATAAACTCTTTCTCAGG,TAAACTCTTTCTCAGGCAT,ATAAACTCTTTCTCAGGCA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCRNF169_74_ORF_1
0.7081
0.111424906
0.054867449
87
ORF sequence:
ATGCCTGAGAAAGAGTTTATATTCAGAACGCCAATCAAGTTAAGCAAGCCGGGAGAACTCAGTGAGGAGTATGGATGCCTGAGAAAG
Peptide sequence:
MPEKEFIFRTPIKLSKPGELSEEYGCLRK
IRESfinder result
IRESfinder score
0.185996014
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
bottom of page