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mmu_circRexo5_1144
Basic information of circular RNA
PanCircBase ID:
mmu_circRexo5_1144
mm39_Chr. Position ID:
chr7|119400452|119433624|+
Gene name:
Rexo5
Transcript:
ENSMUST00000033218.15
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
10
Exon/intron indexes:
3,4,5,6,7,8,9,10,11,12
Exon/intron offsets:
0,1511,3913,17153,18202,22526,26073,26862,31441,33034
Genomic length:
33172
Exon/intron sizes in nt:
12,79,71,44,89,11,61,30,00,00,00,00,000
Flanking exon/introns:
chr7:119398900-119400452|chr7:119433624-119447954
Splice length:
1144
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
CTGGTGCCAGCTTTCACACCAAAAACAACTAAACAACGTGGTGGTTTTTATTCTGAAGGGAATGAGTCAGCTACATTTCTACAGGTTCTATTTGGAATTCAGATTTCTCCGAAAGACATTCAGACATAAATTCAGCTTGCCTTCTCCAACATCTAGTTTTCTATTTGATATCATTGGGCTGCAGAAGAAAAAATCAGCTAGAAGTTTTCGTAGGACTGTCGAAGGACCTCTAATTTCTGCCACTTTAAGATCCAGCATCGACCTACAGAATGACCCCATCATTCAAAAGTATGGCTATAAGAACGTGGGCTTGACTAAATGCCTTCTGACAAAGGAAGAAATGAAAACATTTCACTTCCCCTTACCAGGGTCTCCTAACTATGAAAACTTTATCCTTACCAAGTATACTGGTTTCATAACAGATAGCAGTCCCCTCTTTGGACTTGACTGTGAAGTGTGCCTTACATCCATGGGGAAAGAACTAACACGCATCTCACTGGTTACTGAAGGAGGCTACTGTCTTATAGATGAACTTGTCAAGCCTGATCTCAAGATTCTGGATTACCTTACCAGTTTTACAGGAATCACGAAGGAGATTCTTAACCCAGTGACAACAAAACTCAAAGATGTACAGAAGCTGTTAAGAGAACTGCTTCCTCCTGATGCTGTGTTAGTGGGCCATTGCCTAGACTTGGATCTCAGAGTATTAAAAATTGCAGAGTTCAATCTGGAGGCACTAGCAGCCAATCAGGAGCAAGGAGACAAGGAAGAAGCTGCACATATGAGTGTTTTAAAATGCCTGGAGTCAATGGGTCAGAAACTCCTTTTCTTGACCCAGGATATAAATGAGCTTTCTTCTTATAGAAATTGTCAAACTATTAAATGCTCTTCAAATAAAAAGGTGCTTGAGCAGGCCAGGGTGGAAGTCCCTTTGTTCCCCTTCAATATTGTGGAGTTCTCTTTTCAGCCCTTTCCACCCCTCTTCGCTGAGGAGATGAAAAACAGTATGAAGACCAAGTGGACACAAATGTCAACTGTCTATGCTGGGCCATTTAGCAAAGATTGTAACGTCGGGGCTCTGAAGAAGGTGTTTAGTAGCTTGGGCCCAGTACACTCAATCACTCTTGTTCTTGAAACTTACAGG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
ATTGTAACGTCGGGGCTCTG
60.11
AGCTGACTCATTCCCTTCAGA
58.46
155
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
GATTGTAACGTCGGGGCTCT
59.82
AGCTGACTCATTCCCTTCAGA
58.46
156
PCR template sequence:
TGGGCCATTTAGCAAAGATTGTAACGTCGGGGCTCTGAAGAAGGTGTTTAGTAGCTTGGGCCCAGTACACTCAATCACTCTTGTTCTTGAAACTTACAGGCTGGTGCCAGCTTTCACACCAAAAACAACTAAACAACGTGGTGGTTTTTATTCTGAAGGGAATGAGTCAGCTACATTTCTACAGGTTCTATTTGGAATTC
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
5
Interacting miRNAs (#binding sites)
mmu-miR-27b-3p(1), mmu-miR-27a-3p(1), mmu-miR-203-3p(1), mmu-miR-335-3p(1), mmu-miR-338-3p(1)
siRNAs for circular RNA silencing
Junction sequence
TGAAACTTACAGGCTGGTGCCAGCTT
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCREXO5_1144_ORF_1
0.7734
0.029314917
0.993358144
1212
ORF sequence:
ATGAGTCAGCTACATTTCTACAGGTTCTATTTGGAATTCAGATTTCTCCGAAAGACATTCAGACATAAATTCAGCTTGCCTTCTCCAACATCTAGTTTTCTATTTGATATCATTGGGCTGCAGAAGAAAAAATCAGCTAGAAGTTTTCGTAGGACTGTCGAAGGACCTCTAATTTCTGCCACTTTAAGATCCAGCATCGACCTACAGAATGACCCCATCATTCAAAAGTATGGCTATAAGAACGTGGGCTTGACTAAATGCCTTCTGACAAAGGAAGAAATGAAAACATTTCACTTCCCCTTACCAGGGTCTCCTAACTATGAAAACTTTATCCTTACCAAGTATACTGGTTTCATAACAGATAGCAGTCCCCTCTTTGGACTTGACTGTGAAGTGTGCCTTACATCCATGGGGAAAGAACTAACACGCATCTCACTGGTTACTGAAGGAGGCTACTGTCTTATAGATGAACTTGTCAAGCCTGATCTCAAGATTCTGGATTACCTTACCAGTTTTACAGGAATCACGAAGGAGATTCTTAACCCAGTGACAACAAAACTCAAAGATGTACAGAAGCTGTTAAGAGAACTGCTTCCTCCTGATGCTGTGTTAGTGGGCCATTGCCTAGACTTGGATCTCAGAGTATTAAAAATTGCAGAGTTCAATCTGGAGGCACTAGCAGCCAATCAGGAGCAAGGAGACAAGGAAGAAGCTGCACATATGAGTGTTTTAAAATGCCTGGAGTCAATGGGTCAGAAACTCCTTTTCTTGACCCAGGATATAAATGAGCTTTCTTCTTATAGAAATTGTCAAACTATTAAATGCTCTTCAAATAAAAAGGTGCTTGAGCAGGCCAGGGTGGAAGTCCCTTTGTTCCCCTTCAATATTGTGGAGTTCTCTTTTCAGCCCTTTCCACCCCTCTTCGCTGAGGAGATGAAAAACAGTATGAAGACCAAGTGGACACAAATGTCAACTGTCTATGCTGGGCCATTTAGCAAAGATTGTAACGTCGGGGCTCTGAAGAAGGTGTTTAGTAGCTTGGGCCCAGTACACTCAATCACTCTTGTTCTTGAAACTTACAGGCTGGTGCCAGCTTTCACACCAAAAACAACTAAACAACGTGGTGGTTTTTATTCTGAAGGGAATGAGTCAGCTACATTTCTACAGGTTCTATTTGGAATTCAGATTTCTCCGAAAGACATTCAGACATAA
Peptide sequence:
MSQLHFYRFYLEFRFLRKTFRHKFSLPSPTSSFLFDIIGLQKKKSARSFRRTVEGPLISATLRSSIDLQNDPIIQKYGYKNVGLTKCLLTKEEMKTFHFPLPGSPNYENFILTKYTGFITDSSPLFGLDCEVCLTSMGKELTRISLVTEGGYCLIDELVKPDLKILDYLTSFTGITKEILNPVTTKLKDVQKLLRELLPPDAVLVGHCLDLDLRVLKIAEFNLEALAANQEQGDKEEAAHMSVLKCLESMGQKLLFLTQDINELSSYRNCQTIKCSSNKKVLEQARVEVPLFPFNIVEFSFQPFPPLFAEEMKNSMKTKWTQMSTVYAGPFSKDCNVGALKKVFSSLGPVHSITLVLETYRLVPAFTPKTTKQRGGFYSEGNESATFLQVLFGIQISPKDIQT
IRESfinder result
IRESfinder score
0.786309187
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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