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mmu_circRanbp17_612
Basic information of circular RNA
PanCircBase ID:
mmu_circRanbp17_612
mm39_Chr. Position ID:
chr11|33429142|33437747|-
Gene name:
Ranbp17
Transcript:
ENSMUST00000102815.10
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
5
Exon/intron indexes:
10,9,8,7,6
Exon/intron offsets:
0,1879,3863,6775,8500
Genomic length:
8605
Exon/intron sizes in nt:
1,47,12,07,41,66,105
Flanking exon/introns:
chr11:33428336-33429142|chr11:33437747-33441326
Splice length:
612
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTTGATTATTCCAGACCTTCAGCAAAACATAGGAAAATAGCTACCTCATTCCGTGACACTTCTCTAAAAGACATTCTGGTGTTAGCGTGTTCTCTCCTGAAACAGGTGTTGGCCAAACCTTTAAATCTTCAGGATCAAGATCAACAGAGTCTGGTAATGCAGGTCTTAAAGCTGGTCCTCAGCTGCCTGAACTTTGACTTCCTGGGCAGTTCAGCAGACGAATCTGCGGACGATCTTTGCACAGTGCAGATTCCAACAACCTGGAGAACAATTTTCCTAGAGCCAGAAACATTGGATCTTTTCTTCAATTTGTATCACTCGCTCCCACCACTGCTGTCTCAGTTAGCACTTTCGTGCTTAGTTCAGTTTGCTTCTACAAGAAGATCCTTATTTAGCAGTCCTGAGCGCGCCAAGTACCTTGGTAACTTAATTAAAGGGGTGAAAAGGATACTTGAAAACCCCCAGGGTTTGTCTGATCCTGGCAATTATCATGAATTCTGTCGATTTTTGGCTCGTTTAAAGACAAACTATCAGCTGGGAGAGTTAGTTTTGGTGAAGGAGTATGCGGAAGTGATTGGATTAATTGCCAATTTTACTATTACTAGCCTTCAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
TGGTGAAGGAGTATGCGGAAG
59.79
GGAGAGAACACGCTAACACCA
60
159
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
GGTGAAGGAGTATGCGGAAGT
59.79
GGAGAGAACACGCTAACACCA
60
158
PCR template sequence:
TCGTTTAAAGACAAACTATCAGCTGGGAGAGTTAGTTTTGGTGAAGGAGTATGCGGAAGTGATTGGATTAATTGCCAATTTTACTATTACTAGCCTTCAGGTTGATTATTCCAGACCTTCAGCAAAACATAGGAAAATAGCTACCTCATTCCGTGACACTTCTCTAAAAGACATTCTGGTGTTAGCGTGTTCTCTCCTGA
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
13
Interacting miRNAs (#binding sites)
mmu-miR-20b-5p(1), mmu-let-7a-5p(1), mmu-miR-106a-5p(1), mmu-miR-93-5p(1), mmu-miR-20a-5p(1), mmu-miR-17-5p(1), mmu-let-7c-5p(1), mmu-miR-106b-5p(1), mmu-miR-185-5p(1), mmu-let-7d-5p(1), mmu-miR-182-5p(1), mmu-miR-383-5p(1), mmu-miR-98-5p(1)
siRNAs for circular RNA silencing
Junction sequence
TACTAGCCTTCAGGTTGATTATTCCA
siRNA sets
GAATAATCAACCTGAAGGC, GGAATAATCAACCTGAAGG, AATAATCAACCTGAAGGCT
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCRANBP17_612_ORF_1
0.7185
0.021747037
0.979374128
1068
ORF sequence:
ATGCAGGTCTTAAAGCTGGTCCTCAGCTGCCTGAACTTTGACTTCCTGGGCAGTTCAGCAGACGAATCTGCGGACGATCTTTGCACAGTGCAGATTCCAACAACCTGGAGAACAATTTTCCTAGAGCCAGAAACATTGGATCTTTTCTTCAATTTGTATCACTCGCTCCCACCACTGCTGTCTCAGTTAGCACTTTCGTGCTTAGTTCAGTTTGCTTCTACAAGAAGATCCTTATTTAGCAGTCCTGAGCGCGCCAAGTACCTTGGTAACTTAATTAAAGGGGTGAAAAGGATACTTGAAAACCCCCAGGGTTTGTCTGATCCTGGCAATTATCATGAATTCTGTCGATTTTTGGCTCGTTTAAAGACAAACTATCAGCTGGGAGAGTTAGTTTTGGTGAAGGAGTATGCGGAAGTGATTGGATTAATTGCCAATTTTACTATTACTAGCCTTCAGGTTGATTATTCCAGACCTTCAGCAAAACATAGGAAAATAGCTACCTCATTCCGTGACACTTCTCTAAAAGACATTCTGGTGTTAGCGTGTTCTCTCCTGAAACAGGTGTTGGCCAAACCTTTAAATCTTCAGGATCAAGATCAACAGAGTCTGGTAATGCAGGTCTTAAAGCTGGTCCTCAGCTGCCTGAACTTTGACTTCCTGGGCAGTTCAGCAGACGAATCTGCGGACGATCTTTGCACAGTGCAGATTCCAACAACCTGGAGAACAATTTTCCTAGAGCCAGAAACATTGGATCTTTTCTTCAATTTGTATCACTCGCTCCCACCACTGCTGTCTCAGTTAGCACTTTCGTGCTTAGTTCAGTTTGCTTCTACAAGAAGATCCTTATTTAGCAGTCCTGAGCGCGCCAAGTACCTTGGTAACTTAATTAAAGGGGTGAAAAGGATACTTGAAAACCCCCAGGGTTTGTCTGATCCTGGCAATTATCATGAATTCTGTCGATTTTTGGCTCGTTTAAAGACAAACTATCAGCTGGGAGAGTTAGTTTTGGTGAAGGAGTATGCGGAAGTGATTGGATTAATTGCCAATTTTACTATTACTAGCCTTCAG
Peptide sequence:
MQVLKLVLSCLNFDFLGSSADESADDLCTVQIPTTWRTIFLEPETLDLFFNLYHSLPPLLSQLALSCLVQFASTRRSLFSSPERAKYLGNLIKGVKRILENPQGLSDPGNYHEFCRFLARLKTNYQLGELVLVKEYAEVIGLIANFTITSLQVDYSRPSAKHRKIATSFRDTSLKDILVLACSLLKQVLAKPLNLQDQDQQSLVMQVLKLVLSCLNFDFLGSSADESADDLCTVQIPTTWRTIFLEPETLDLFFNLYHSLPPLLSQLALSCLVQFASTRRSLFSSPERAKYLGNLIKGVKRILENPQGLSDPGNYHEFCRFLARLKTNYQLGELVLVKEYAEVIGLIANFTITSLQ
IRESfinder result
IRESfinder score
0.852333725
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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