top of page
mmu_circPrpsap2_808
Basic information of circular RNA
PanCircBase ID:
mmu_circPrpsap2_808
mm39_Chr. Position ID:
chr11|61627741|61647503|-
Gene name:
Prpsap2
Transcript:
ENSMUST00000151966.8
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
7
Exon/intron indexes:
8,7,6,5,4,3,2
Exon/intron offsets:
0,4030,8029,11996,15951,19279,19666
Genomic length:
19762
Exon/intron sizes in nt:
149,56,116,173,67,151,96
Flanking exon/introns:
chr11:61625904-61627741|chr11:61647503-61652779
Splice length:
808
Other database IDs:
CIRCpedia: MMU_CIRCpedia_224599, circAtlas: mmu-Prpsap2_0003
circBase: hsa_circ_0004488, circAtlas: hsa-PRPSAP2_0001, CIRCpedia: HSA_CIRCpedia_19602
Human Ortholog IDs:
Mature spliced Sequence:
GAGGAATTTTGTTGTCAGAGAATAACAGGAGGTTGTCCATAATTGACTTTAAGCAGCAAACAGTAAAACACTGAGCTCTTCAGCTCCGCCTTTCTTGCTCTGAGAATTGGAAAGCCAAGAAGGTTTTGATGTTTTGTGTGGCGCCTCCTGAATTAGAAACCAAGATGAACATAACCAAAGGAGGCCTCGTGTTGTTTTCAGCAAATTCCAATTCATCATGTATGGAGCTTTCAAAGAAAATTGCTGAAAACAAGAGTTCAAATCCAGGAGTCTGTGAGAGGAAAAGATGTATTTATCATCCAAACCATCTCAAAGGACGTGAACACCACCATCATGGAGCTGCTGATCATGGTATATGCATGTAAGACCTCATGTGCCAAGAGCATCATCGGAGTGATCCCCTACTTTCCTTATAGCAAGCAATGCAAAATGAGAAAAAGGGGCTCCATTGTCTCAAAATTGCTGGCTTCTATGATGTGCAAAGCTGGTCTGACTCATCTCATCACTATGGATTTACACCAGAAGGAAATCCAGGGCTTCTTCAATATTCCAGTGGATAATTTAAGAGCCTCCCCATTCCTGTTACAATATATTCAAGAAGAGATCCCAGATTATAGGAATGCAGTCATCGTGGCCAAGTCTCCAGCCTCAGCCAAGAGGGCACAATCTTTTGCAGAGCGTCTACGTCTGGGAATCGCAGTGATCCATGGAGAAGCACAGGATGCTGAGTCTGACTTGGTGGATGGCCGGCACTCCCCACCAATGGTCAGGAGTGTAGCTGCCATCCATCCCAGCCTGGAGATCCCGA
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
AGTCTGACTTGGTGGATGGC
59.67
AGTGTTTTACTGTTTGCTGCT
56.57
153
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
TGCTGAGTCTGACTTGGTGG
59.61
AGTGTTTTACTGTTTGCTGCT
56.57
158
PCR template sequence:
GGAGAAGCACAGGATGCTGAGTCTGACTTGGTGGATGGCCGGCACTCCCCACCAATGGTCAGGAGTGTAGCTGCCATCCATCCCAGCCTGGAGATCCCGAGAGGAATTTTGTTGTCAGAGAATAACAGGAGGTTGTCCATAATTGACTTTAAGCAGCAAACAGTAAAACACTGAGCTCTTCAGCTCCGCCTTTCTTGCTC
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
5
Interacting miRNAs (#binding sites)
mmu-miR-9-5p(1), mmu-miR-222-3p(1), mmu-miR-143-3p(1), mmu-miR-207(1), mmu-miR-3065-5p(1)
siRNAs for circular RNA silencing
Junction sequence
CTGGAGATCCCGAGAGGAATTTTGTT
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCPRPSAP2_808_ORF_1
0.9315
0.163198621
0.746566314
549
ORF sequence:
ATGGAGCTGCTGATCATGGTATATGCATGTAAGACCTCATGTGCCAAGAGCATCATCGGAGTGATCCCCTACTTTCCTTATAGCAAGCAATGCAAAATGAGAAAAAGGGGCTCCATTGTCTCAAAATTGCTGGCTTCTATGATGTGCAAAGCTGGTCTGACTCATCTCATCACTATGGATTTACACCAGAAGGAAATCCAGGGCTTCTTCAATATTCCAGTGGATAATTTAAGAGCCTCCCCATTCCTGTTACAATATATTCAAGAAGAGATCCCAGATTATAGGAATGCAGTCATCGTGGCCAAGTCTCCAGCCTCAGCCAAGAGGGCACAATCTTTTGCAGAGCGTCTACGTCTGGGAATCGCAGTGATCCATGGAGAAGCACAGGATGCTGAGTCTGACTTGGTGGATGGCCGGCACTCCCCACCAATGGTCAGGAGTGTAGCTGCCATCCATCCCAGCCTGGAGATCCCGAGAGGAATTTTGTTGTCAGAGAATAACAGGAGGTTGTCCATAATTGACTTTAAGCAGCAAACAGTAAAACACTGA
Peptide sequence:
MELLIMVYACKTSCAKSIIGVIPYFPYSKQCKMRKRGSIVSKLLASMMCKAGLTHLITMDLHQKEIQGFFNIPVDNLRASPFLLQYIQEEIPDYRNAVIVAKSPASAKRAQSFAERLRLGIAVIHGEAQDAESDLVDGRHSPPMVRSVAAIHPSLEIPRGILLSENNRRLSIIDFKQQTVKH
IRESfinder result
IRESfinder score
0.638227587
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
bottom of page