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mmu_circMyo9a_4866
Basic information of circular RNA
PanCircBase ID:
mmu_circMyo9a_4866
mm39_Chr. Position ID:
chr9|59750345|59831025|+
Gene name:
Myo9a
Transcript:
ENSMUST00000128341.2
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
26
Exon/intron indexes:
16,17,18,19,20,21,22,23,24,25,26,27,28,29,30,31,32,33,34,35,36,37,38,39,40,41
Exon/intron offsets:
0,12303,13744,17017,18362,20853,22504,25048,26411,27373,31539,41417,46350,51078,51698,52130,53427,57287,59844,62829,64285,65131,66753,67521,78660,80558
Genomic length:
80680
Exon/intron sizes in nt:
76,14,74,01,23,81,11,10,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,000
Flanking exon/introns:
chr9:59739591-59750345|chr9:59831025-59831853
Splice length:
4866
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTATAACCCGAAAAAACCCAAGAACACCCCTTTCTGATCTTCAAGGCATGAACACTCTAAATGAAAAAAATCAACATGACACATTTGATATTGCCTGGAATGTCAGAACTGGCATTCGCCAAAGCAGACTACCAGCTAGCAATACTTCCTTGCTTGATAAAGATGGGATATTCGCTCATTCAGCAAGCAGCAAACTCCTGGAAAGAGCTCATGGAATTCTCACGAGAAACAAAAATTTCCGGTCAAAACCTGTTCTTCCAAAGCATTTGCTGGAGGTAAATTCTTTGAAGCATCTGACAAGACTGACCCTTCAGGATCGAATTACCAAATCTCTTCTTCATTTGCACAAGAAGAAGAAACCTCCCAGTATCAGCGCTCAGTTTCAGGCCTCCTTAAGCAAGCTGATGGAGACACTTGGTCAAGCAGAACCATATTTTGTAAAATGTATTCGCTCAAATGCTGAAAAGCTGCCGTTAAGATTCAGTGATGCCTTGGTACTAAGACAGCTTCGGTACACTGGGATGCTGGAAACAGTTAGAATTCGCCAATCTGGATATAGCTCCAAATATTCTTTCCAGGATTTTGTTAGCCACTTTCATGTACTTCTTCCTCAACATATTATTCCATCTAAATTTAATATTCAAGATTTCTTCAGAAAAATAAATATTAATTCTGATAATTATCAAGTTGGAAAAACCATGGTTTTCCTAAAGGAGCATGAACGACAGCACTTACAAGATCTGCTTCATCAGGAAGTGCTTCGCAGAATCGTACTGTTGCAACGGTGGTTTAGGGTCTTGCTCTCTAGGCAGCAGTTCCTTCATTTGAGACAGGCATCTATTATTATTCAGCGATTTTGGAGGAATTACCTAAATCAGAAGCAAGTCAGAAATGCGGCTGTGGAGAAAGATGCTTTCATAATGGCTAGTGCAGCTTCCCTTCTTCAGGCATCCTGGCGTGCTCACTTAGAGAGGCAACGGTACTTGGAATTACGAGCTGCAGCTGTCATTATCCAGCAGAGATGGAGGGAACTCTATAGGTGTAGGCACAAGGCTGCTACCTGTATACAATCAAGATGGAGGGGCTACAGGCAAAGGAAGAAGTACAAAGAACAAAGGAATAAAATTATCCTGTTACAGTCAATATATAGAGGATTCCGAGCACGGCAAAGATGTAATGCTTTAAAAGAGGAAAAGCTGAGAGAAGCAAAACTAGAGCATGGACTGGTGCATGTCAAGGCATGTGGACCTCTAGAAATCCAGGGTTCAGATCCTTCTGAGTGGGAGGATCGTTCCTTTGACAACAGAGTGAAAGCCATAGAAGAATGTAAATATGTGATAGAGAGTAATCGAATTAGCCGTGAGAGTTCAATGGACTTCTCAAAGGAGTCTCCAGACAAGCAACAGGAGAGAGGCAGACGCCAAAGTGGTACAGACTTACAGGAAGATGTGATTGTAAGACAGAGGCCCAAGTCCTTGGAGGATCTACATCAGAAAAAAGTAGGTCGGGCCAAAAGAGAAAGTCGGAGAATGAGAGAATTAGAGCAAGCTATATTTAGCTTAGAATTACTGAAAGTCCGTTCTCTTGGTGGCATGTCTCCTTCAGAGGAACGTAGATGGTCTACAGAATTGATGCCTGAAGGCCTTCAATCTCCACATGGTACTCCTGATAGTGAGAGCTCTCAAGGGAGCTTAGAACTTTTGACCTGTGATGAGAACCAAAAGAGCAAACCAGAGTCTCTCATTTTAGATGAGGGAGAATTGAAAATTTCATCACCCAATACATTTACCAATCCAAAATCACAAGATAATGCCCTCAGTGCCTCAAGTGAGACAAGCTCTACATTAGCTGGAAAAGGAGCATCCTCTGACTCAGAGCATTTGAAGAATGGGACTGCAAAGGAAAAGCTTGTCTGTAGTTCTGAACCTATCACCTGTAAACCCCAGCTGAGAGACTCTTTTGTTTCAAGCAGTCTGCCTACATTTTTTTATATTCCTCATCAAGAAGCTCTGAAAACAAGTTCCCATCTTGACACAAGTATCCAAAGAAACAAACTACCAGAAAGAGAAGCCATTTTGAAGACGACTCTTACTCAGGATATTAACAGAGAAGCCAGGAAGTGTCAGTTTTCAGGAGATCAGATGACTCCTTTGAATACGGATTCTTCATGCACTGTGCTTAAGAAGTTAGAAAAGCTGAATATTGAAAAAGAGAAAAGGCAAAAGCAGTTACAACAGCAGAATGAAAAAGAAATGATGGAACAGATTCGTCAGCAGACAGATATTTTAGAGAAGGAACGTAAGGCCTTCAAGACAATTGAACAGTCACGAACTGAGGCCTCTGTCTTGGCACCATCCTTTTATCAGCCAAGACAAAAAGTAGAGAGGCCATGTTCTCTGTATATCCAGAATACTCCGAGTAAAGGAGAAGCTGGTGTACTAGGTTCCCCATCAGCAGTCACTAAAAGAGACGCAGCTCTTGCCACAAAAGATAGTCCCTCCATTCATTTACCCCCAAAAGACCGACCTGTCACCCTGTTCTTTGAAAAAAAAGGAAGCCCATGCCAATCTAGAACTGTCAAGGAATTACCGAAGACAGAAAGAACGGGCACCCAACATGATGCTGCCTATAAACTCTCTAATAATCGCAGTACAGAAAGAGACCACTTTAAGTCAACACACTTTTACAGCCACAGATCTGATGACCCTTCCAGAGAGGGAAGTTCAAGAGCCATTTTTTTCACACCAAAAGACAATATTACTCCCCTTGTACACAGTGGAAATCCTCAAGCCCACAAACAAGATGAATCAGCTTGGAAACCTAAGTTAGCAGGGCCCGGGCAACAAGAGACATCACAACGATTTTCTTCAGTTGATGAGCAAGCAAAGCTCCATAAGGCTATGTCTCAAGGAGAGATTACAAAATTGGCAGTAAGACAGAAGGCTTCAGATTTGGACATAAGACCCCAGAGAGCGAAGATGAGATTCTGGGCCAAAGGGAAACAAGGAGAGAAGAAGACAACTAGAGTAAAACCTGCTTCCCAGTCGGAGATCTCATCATTCTTTCCTGGCCCAGATGTGACACCTGCTCATCCATTTTCTGACGAGTTAACTCAGTACCACCCAACACCTCCTTTGAGTCCAGAACTGCCTGGGAGTTGTCGAAAAGAGTTCAAAGAGAATAAGGAACCTTCTCCAAAGGCAAAGCGCAAGAGAGGTGTAAAAATCAGCAGTGTGGCCTTGGACTCTATGCATTGGCAAAATGACTCTGTCCAAATCATAGCAAGTGCCAGTGATTTAAAAAGTATGGATGAGTTTCTTCTGAAAAAGATGAATGACCTAGATAATGAAGACAGCAAGAAGGATACATTAGTGGATGTTGTATTTAAAAAAGCCCTGAAAGAATTTCGGCAGAATATCTTCAGCTCTTATTCATCTGCATTGGCGATGGATGATGGGAAAAGCATCCGCTATAAAGACCTATATGCGCTATTTGAACAGATTCTGGAAAAAACCATGAGATTGGAGCAACGTGATTGGAATGAATCTCCAGTGAGAGTTTGGGTTAACACTTTTAAGGTGTTTTTAGATGAATACATGAATGAATTCAAGACTTTGGATAGCACAGCCCCAAAGGTGCTTAAAACAGAAAGAAAGAAAAGGAGGAAAAAGGAAACCGATTTGGTGGAAGAGCACAATGGCCACATCTTTAAGGCCACCCAGTATAGCATCCCTACATACTGTGAATACTGTTCTTCCTTGATATGGATAATGGACAGAGCCTCTGTTTGCAAATTGTGTAAGTACGCTTGCCATAAGAAGTGCTGCCTAAAAACCACAGCCAAGTGTTCTAAGAAGTATGATCCAGAGCTGTCATCTCGGCAATTTGGGGTTGAGCTGTCCCGTTTGACTAGTGAAGACCGAGCTGTTCCTTTAGTGGTAGAGAAGCTCATAAACTATATTGAAATGCATGGACTTTATACTGAAGGTATTTACCGAAAGTCTGGTTCAACTAATAAAATCAAGGAGCTTCGACAAGGTCTAGATACAGATGCTGAAAGTGTAAACCTAGATGACTATAACATACATGTCATTGCAAGTGTATTCAAACAATGGCTTCGTGATTTGCCCAATCCACTCATGACTTTTGAACTCTATGAAGAATTCCTTCGAGCTATGGGCCTTCAGGAAAGAAAAGAGACAATCCGTGGTGTGTACTCTGTAATTGATCAGCTCTCCCGAACTCATCTCAATACACTGGAACGCCTTATCTTTCATCTAGTTAGGATTGCTCTACAGGAAGACACTAATCGAATGTCTGCTAATGCTTTGGCCATTGTGTTTGCACCTTGCATTCTCCGTTGCCCTGACACTACTGACCCACTACAAAGTGTACAAGATATCAGTAAGACTACCACATGTGTGGAGCTGATAGTGGTAGAACAAATGAATAAATATAAGGCTCGTCTCAAAGACATCAGTAGCCTGGAATTTGCTGAAAATAAAGCAAAGACCAGACTGTCACTGATTCGTAGATCAATGGGAAAGGGGCGTATACACCGAGGAAACTATCCAAGTCCATCTTCCCCTGTTATAGTCCGATTGCCTTCCATGTCTGATGTCCCAGAAGAGACCTTGTCTAGTGAGACAGCCATGGAAACTGACCTCACAGACCAGCAGCAAGCAGCAATGCAGCAGGAGGAAAAAGTACTGACTGAGCAGATTGAGAACCTACAGAAAGAAAAGGAAGAACTAACATTTGAGATGCTTGTATTGGAACCTCGTGCCTCTGATGATGAAACCCTTGAATCTGAGGCTTCTATTGGGACTGCTGATAGTTCGGAAAATTTGAATATGGATTCTGAAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
ATTGGAACCTCGTGCCTCTG
60.04
TGCCTTGAAGATCAGAAAGGGG
60.29
143
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
ATTGGAACCTCGTGCCTCTG
60.04
GCCTTGAAGATCAGAAAGGGGT
60.29
142
PCR template sequence:
CTTGTATTGGAACCTCGTGCCTCTGATGATGAAACCCTTGAATCTGAGGCTTCTATTGGGACTGCTGATAGTTCGGAAAATTTGAATATGGATTCTGAAGGTATAACCCGAAAAAACCCAAGAACACCCCTTTCTGATCTTCAAGGCATGAACACTCTAAATGAAAAAAATCAACATGACACATTTGATATTGCCTGGAA
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
32
Interacting miRNAs (#binding sites)
mmu-miR-532-5p(3), mmu-miR-135a-5p(2), mmu-miR-335-3p(2), mmu-miR-93-5p(1), mmu-miR-1a-3p(1), mmu-miR-199a-5p(1), mmu-miR-206-3p(1), mmu-miR-103-3p(1), mmu-miR-31-5p(1), mmu-miR-19b-3p(1), mmu-miR-146a-5p(1), mmu-miR-33-5p(1), mmu-miR-19a-3p(1), mmu-miR-152-3p(1), mmu-miR-148b-3p(1), mmu-miR-148a-3p(1), mmu-miR-18a-5p(1), mmu-miR-326-3p(1), mmu-miR-143-3p(1), mmu-miR-136-5p(1), mmu-miR-29b-1-5p(1), mmu-miR-370-3p(1), mmu-miR-340-5p(1), mmu-miR-107-3p(1), mmu-miR-383-5p(1), mmu-miR-300-3p(1), mmu-miR-5101(1), mmu-miR-669d-5p(1), mmu-miR-452-3p(1), mmu-miR-3470b(1), mmu-miR-540-3p(1), mmu-miR-338-3p(1)
siRNAs for circular RNA silencing
Junction sequence
ATGGATTCTGAAGGTATAACCCGAAA
siRNA sets
GTTATACCTTCAGAATCCA, TTTCGGGTTATACCTTCAG, TTATACCTTCAGAATCCAT
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCMYO9A_4866_ORF_1
0.8585
0.063199571
1
9684
ORF sequence:
ATGAACACTCTAAATGAAAAAAATCAACATGACACATTTGATATTGCCTGGAATGTCAGAACTGGCATTCGCCAAAGCAGACTACCAGCTAGCAATACTTCCTTGCTTGATAAAGATGGGATATTCGCTCATTCAGCAAGCAGCAAACTCCTGGAAAGAGCTCATGGAATTCTCACGAGAAACAAAAATTTCCGGTCAAAACCTGTTCTTCCAAAGCATTTGCTGGAGGTAAATTCTTTGAAGCATCTGACAAGACTGACCCTTCAGGATCGAATTACCAAATCTCTTCTTCATTTGCACAAGAAGAAGAAACCTCCCAGTATCAGCGCTCAGTTTCAGGCCTCCTTAAGCAAGCTGATGGAGACACTTGGTCAAGCAGAACCATATTTTGTAAAATGTATTCGCTCAAATGCTGAAAAGCTGCCGTTAAGATTCAGTGATGCCTTGGTACTAAGACAGCTTCGGTACACTGGGATGCTGGAAACAGTTAGAATTCGCCAATCTGGATATAGCTCCAAATATTCTTTCCAGGATTTTGTTAGCCACTTTCATGTACTTCTTCCTCAACATATTATTCCATCTAAATTTAATATTCAAGATTTCTTCAGAAAAATAAATATTAATTCTGATAATTATCAAGTTGGAAAAACCATGGTTTTCCTAAAGGAGCATGAACGACAGCACTTACAAGATCTGCTTCATCAGGAAGTGCTTCGCAGAATCGTACTGTTGCAACGGTGGTTTAGGGTCTTGCTCTCTAGGCAGCAGTTCCTTCATTTGAGACAGGCATCTATTATTATTCAGCGATTTTGGAGGAATTACCTAAATCAGAAGCAAGTCAGAAATGCGGCTGTGGAGAAAGATGCTTTCATAATGGCTAGTGCAGCTTCCCTTCTTCAGGCATCCTGGCGTGCTCACTTAGAGAGGCAACGGTACTTGGAATTACGAGCTGCAGCTGTCATTATCCAGCAGAGATGGAGGGAACTCTATAGGTGTAGGCACAAGGCTGCTACCTGTATACAATCAAGATGGAGGGGCTACAGGCAAAGGAAGAAGTACAAAGAACAAAGGAATAAAATTATCCTGTTACAGTCAATATATAGAGGATTCCGAGCACGGCAAAGATGTAATGCTTTAAAAGAGGAAAAGCTGAGAGAAGCAAAACTAGAGCATGGACTGGTGCATGTCAAGGCATGTGGACCTCTAGAAATCCAGGGTTCAGATCCTTCTGAGTGGGAGGATCGTTCCTTTGACAACAGAGTGAAAGCCATAGAAGAATGTAAATATGTGATAGAGAGTAATCGAATTAGCCGTGAGAGTTCAATGGACTTCTCAAAGGAGTCTCCAGACAAGCAACAGGAGAGAGGCAGACGCCAAAGTGGTACAGACTTACAGGAAGATGTGATTGTAAGACAGAGGCCCAAGTCCTTGGAGGATCTACATCAGAAAAAAGTAGGTCGGGCCAAAAGAGAAAGTCGGAGAATGAGAGAATTAGAGCAAGCTATATTTAGCTTAGAATTACTGAAAGTCCGTTCTCTTGGTGGCATGTCTCCTTCAGAGGAACGTAGATGGTCTACAGAATTGATGCCTGAAGGCCTTCAATCTCCACATGGTACTCCTGATAGTGAGAGCTCTCAAGGGAGCTTAGAACTTTTGACCTGTGATGAGAACCAAAAGAGCAAACCAGAGTCTCTCATTTTAGATGAGGGAGAATTGAAAATTTCATCACCCAATACATTTACCAATCCAAAATCACAAGATAATGCCCTCAGTGCCTCAAGTGAGACAAGCTCTACATTAGCTGGAAAAGGAGCATCCTCTGACTCAGAGCATTTGAAGAATGGGACTGCAAAGGAAAAGCTTGTCTGTAGTTCTGAACCTATCACCTGTAAACCCCAGCTGAGAGACTCTTTTGTTTCAAGCAGTCTGCCTACATTTTTTTATATTCCTCATCAAGAAGCTCTGAAAACAAGTTCCCATCTTGACACAAGTATCCAAAGAAACAAACTACCAGAAAGAGAAGCCATTTTGAAGACGACTCTTACTCAGGATATTAACAGAGAAGCCAGGAAGTGTCAGTTTTCAGGAGATCAGATGACTCCTTTGAATACGGATTCTTCATGCACTGTGCTTAAGAAGTTAGAAAAGCTGAATATTGAAAAAGAGAAAAGGCAAAAGCAGTTACAACAGCAGAATGAAAAAGAAATGATGGAACAGATTCGTCAGCAGACAGATATTTTAGAGAAGGAACGTAAGGCCTTCAAGACAATTGAACAGTCACGAACTGAGGCCTCTGTCTTGGCACCATCCTTTTATCAGCCAAGACAAAAAGTAGAGAGGCCATGTTCTCTGTATATCCAGAATACTCCGAGTAAAGGAGAAGCTGGTGTACTAGGTTCCCCATCAGCAGTCACTAAAAGAGACGCAGCTCTTGCCACAAAAGATAGTCCCTCCATTCATTTACCCCCAAAAGACCGACCTGTCACCCTGTTCTTTGAAAAAAAAGGAAGCCCATGCCAATCTAGAACTGTCAAGGAATTACCGAAGACAGAAAGAACGGGCACCCAACATGATGCTGCCTATAAACTCTCTAATAATCGCAGTACAGAAAGAGACCACTTTAAGTCAACACACTTTTACAGCCACAGATCTGATGACCCTTCCAGAGAGGGAAGTTCAAGAGCCATTTTTTTCACACCAAAAGACAATATTACTCCCCTTGTACACAGTGGAAATCCTCAAGCCCACAAACAAGATGAATCAGCTTGGAAACCTAAGTTAGCAGGGCCCGGGCAACAAGAGACATCACAACGATTTTCTTCAGTTGATGAGCAAGCAAAGCTCCATAAGGCTATGTCTCAAGGAGAGATTACAAAATTGGCAGTAAGACAGAAGGCTTCAGATTTGGACATAAGACCCCAGAGAGCGAAGATGAGATTCTGGGCCAAAGGGAAACAAGGAGAGAAGAAGACAACTAGAGTAAAACCTGCTTCCCAGTCGGAGATCTCATCATTCTTTCCTGGCCCAGATGTGACACCTGCTCATCCATTTTCTGACGAGTTAACTCAGTACCACCCAACACCTCCTTTGAGTCCAGAACTGCCTGGGAGTTGTCGAAAAGAGTTCAAAGAGAATAAGGAACCTTCTCCAAAGGCAAAGCGCAAGAGAGGTGTAAAAATCAGCAGTGTGGCCTTGGACTCTATGCATTGGCAAAATGACTCTGTCCAAATCATAGCAAGTGCCAGTGATTTAAAAAGTATGGATGAGTTTCTTCTGAAAAAGATGAATGACCTAGATAATGAAGACAGCAAGAAGGATACATTAGTGGATGTTGTATTTAAAAAAGCCCTGAAAGAATTTCGGCAGAATATCTTCAGCTCTTATTCATCTGCATTGGCGATGGATGATGGGAAAAGCATCCGCTATAAAGACCTATATGCGCTATTTGAACAGATTCTGGAAAAAACCATGAGATTGGAGCAACGTGATTGGAATGAATCTCCAGTGAGAGTTTGGGTTAACACTTTTAAGGTGTTTTTAGATGAATACATGAATGAATTCAAGACTTTGGATAGCACAGCCCCAAAGGTGCTTAAAACAGAAAGAAAGAAAAGGAGGAAAAAGGAAACCGATTTGGTGGAAGAGCACAATGGCCACATCTTTAAGGCCACCCAGTATAGCATCCCTACATACTGTGAATACTGTTCTTCCTTGATATGGATAATGGACAGAGCCTCTGTTTGCAAATTGTGTAAGTACGCTTGCCATAAGAAGTGCTGCCTAAAAACCACAGCCAAGTGTTCTAAGAAGTATGATCCAGAGCTGTCATCTCGGCAATTTGGGGTTGAGCTGTCCCGTTTGACTAGTGAAGACCGAGCTGTTCCTTTAGTGGTAGAGAAGCTCATAAACTATATTGAAATGCATGGACTTTATACTGAAGGTATTTACCGAAAGTCTGGTTCAACTAATAAAATCAAGGAGCTTCGACAAGGTCTAGATACAGATGCTGAAAGTGTAAACCTAGATGACTATAACATACATGTCATTGCAAGTGTATTCAAACAATGGCTTCGTGATTTGCCCAATCCACTCATGACTTTTGAACTCTATGAAGAATTCCTTCGAGCTATGGGCCTTCAGGAAAGAAAAGAGACAATCCGTGGTGTGTACTCTGTAATTGATCAGCTCTCCCGAACTCATCTCAATACACTGGAACGCCTTATCTTTCATCTAGTTAGGATTGCTCTACAGGAAGACACTAATCGAATGTCTGCTAATGCTTTGGCCATTGTGTTTGCACCTTGCATTCTCCGTTGCCCTGACACTACTGACCCACTACAAAGTGTACAAGATATCAGTAAGACTACCACATGTGTGGAGCTGATAGTGGTAGAACAAATGAATAAATATAAGGCTCGTCTCAAAGACATCAGTAGCCTGGAATTTGCTGAAAATAAAGCAAAGACCAGACTGTCACTGATTCGTAGATCAATGGGAAAGGGGCGTATACACCGAGGAAACTATCCAAGTCCATCTTCCCCTGTTATAGTCCGATTGCCTTCCATGTCTGATGTCCCAGAAGAGACCTTGTCTAGTGAGACAGCCATGGAAACTGACCTCACAGACCAGCAGCAAGCAGCAATGCAGCAGGAGGAAAAAGTACTGACTGAGCAGATTGAGAACCTACAGAAAGAAAAGGAAGAACTAACATTTGAGATGCTTGTATTGGAACCTCGTGCCTCTGATGATGAAACCCTTGAATCTGAGGCTTCTATTGGGACTGCTGATAGTTCGGAAAATTTGAATATGGATTCTGAAGGTATAACCCGAAAAAACCCAAGAACACCCCTTTCTGATCTTCAAGGCATGAACACTCTAAATGAAAAAAATCAACATGACACATTTGATATTGCCTGGAATGTCAGAACTGGCATTCGCCAAAGCAGACTACCAGCTAGCAATACTTCCTTGCTTGATAAAGATGGGATATTCGCTCATTCAGCAAGCAGCAAACTCCTGGAAAGAGCTCATGGAATTCTCACGAGAAACAAAAATTTCCGGTCAAAACCTGTTCTTCCAAAGCATTTGCTGGAGGTAAATTCTTTGAAGCATCTGACAAGACTGACCCTTCAGGATCGAATTACCAAATCTCTTCTTCATTTGCACAAGAAGAAGAAACCTCCCAGTATCAGCGCTCAGTTTCAGGCCTCCTTAAGCAAGCTGATGGAGACACTTGGTCAAGCAGAACCATATTTTGTAAAATGTATTCGCTCAAATGCTGAAAAGCTGCCGTTAAGATTCAGTGATGCCTTGGTACTAAGACAGCTTCGGTACACTGGGATGCTGGAAACAGTTAGAATTCGCCAATCTGGATATAGCTCCAAATATTCTTTCCAGGATTTTGTTAGCCACTTTCATGTACTTCTTCCTCAACATATTATTCCATCTAAATTTAATATTCAAGATTTCTTCAGAAAAATAAATATTAATTCTGATAATTATCAAGTTGGAAAAACCATGGTTTTCCTAAAGGAGCATGAACGACAGCACTTACAAGATCTGCTTCATCAGGAAGTGCTTCGCAGAATCGTACTGTTGCAACGGTGGTTTAGGGTCTTGCTCTCTAGGCAGCAGTTCCTTCATTTGAGACAGGCATCTATTATTATTCAGCGATTTTGGAGGAATTACCTAAATCAGAAGCAAGTCAGAAATGCGGCTGTGGAGAAAGATGCTTTCATAATGGCTAGTGCAGCTTCCCTTCTTCAGGCATCCTGGCGTGCTCACTTAGAGAGGCAACGGTACTTGGAATTACGAGCTGCAGCTGTCATTATCCAGCAGAGATGGAGGGAACTCTATAGGTGTAGGCACAAGGCTGCTACCTGTATACAATCAAGATGGAGGGGCTACAGGCAAAGGAAGAAGTACAAAGAACAAAGGAATAAAATTATCCTGTTACAGTCAATATATAGAGGATTCCGAGCACGGCAAAGATGTAATGCTTTAAAAGAGGAAAAGCTGAGAGAAGCAAAACTAGAGCATGGACTGGTGCATGTCAAGGCATGTGGACCTCTAGAAATCCAGGGTTCAGATCCTTCTGAGTGGGAGGATCGTTCCTTTGACAACAGAGTGAAAGCCATAGAAGAATGTAAATATGTGATAGAGAGTAATCGAATTAGCCGTGAGAGTTCAATGGACTTCTCAAAGGAGTCTCCAGACAAGCAACAGGAGAGAGGCAGACGCCAAAGTGGTACAGACTTACAGGAAGATGTGATTGTAAGACAGAGGCCCAAGTCCTTGGAGGATCTACATCAGAAAAAAGTAGGTCGGGCCAAAAGAGAAAGTCGGAGAATGAGAGAATTAGAGCAAGCTATATTTAGCTTAGAATTACTGAAAGTCCGTTCTCTTGGTGGCATGTCTCCTTCAGAGGAACGTAGATGGTCTACAGAATTGATGCCTGAAGGCCTTCAATCTCCACATGGTACTCCTGATAGTGAGAGCTCTCAAGGGAGCTTAGAACTTTTGACCTGTGATGAGAACCAAAAGAGCAAACCAGAGTCTCTCATTTTAGATGAGGGAGAATTGAAAATTTCATCACCCAATACATTTACCAATCCAAAATCACAAGATAATGCCCTCAGTGCCTCAAGTGAGACAAGCTCTACATTAGCTGGAAAAGGAGCATCCTCTGACTCAGAGCATTTGAAGAATGGGACTGCAAAGGAAAAGCTTGTCTGTAGTTCTGAACCTATCACCTGTAAACCCCAGCTGAGAGACTCTTTTGTTTCAAGCAGTCTGCCTACATTTTTTTATATTCCTCATCAAGAAGCTCTGAAAACAAGTTCCCATCTTGACACAAGTATCCAAAGAAACAAACTACCAGAAAGAGAAGCCATTTTGAAGACGACTCTTACTCAGGATATTAACAGAGAAGCCAGGAAGTGTCAGTTTTCAGGAGATCAGATGACTCCTTTGAATACGGATTCTTCATGCACTGTGCTTAAGAAGTTAGAAAAGCTGAATATTGAAAAAGAGAAAAGGCAAAAGCAGTTACAACAGCAGAATGAAAAAGAAATGATGGAACAGATTCGTCAGCAGACAGATATTTTAGAGAAGGAACGTAAGGCCTTCAAGACAATTGAACAGTCACGAACTGAGGCCTCTGTCTTGGCACCATCCTTTTATCAGCCAAGACAAAAAGTAGAGAGGCCATGTTCTCTGTATATCCAGAATACTCCGAGTAAAGGAGAAGCTGGTGTACTAGGTTCCCCATCAGCAGTCACTAAAAGAGACGCAGCTCTTGCCACAAAAGATAGTCCCTCCATTCATTTACCCCCAAAAGACCGACCTGTCACCCTGTTCTTTGAAAAAAAAGGAAGCCCATGCCAATCTAGAACTGTCAAGGAATTACCGAAGACAGAAAGAACGGGCACCCAACATGATGCTGCCTATAAACTCTCTAATAATCGCAGTACAGAAAGAGACCACTTTAAGTCAACACACTTTTACAGCCACAGATCTGATGACCCTTCCAGAGAGGGAAGTTCAAGAGCCATTTTTTTCACACCAAAAGACAATATTACTCCCCTTGTACACAGTGGAAATCCTCAAGCCCACAAACAAGATGAATCAGCTTGGAAACCTAAGTTAGCAGGGCCCGGGCAACAAGAGACATCACAACGATTTTCTTCAGTTGATGAGCAAGCAAAGCTCCATAAGGCTATGTCTCAAGGAGAGATTACAAAATTGGCAGTAAGACAGAAGGCTTCAGATTTGGACATAAGACCCCAGAGAGCGAAGATGAGATTCTGGGCCAAAGGGAAACAAGGAGAGAAGAAGACAACTAGAGTAAAACCTGCTTCCCAGTCGGAGATCTCATCATTCTTTCCTGGCCCAGATGTGACACCTGCTCATCCATTTTCTGACGAGTTAACTCAGTACCACCCAACACCTCCTTTGAGTCCAGAACTGCCTGGGAGTTGTCGAAAAGAGTTCAAAGAGAATAAGGAACCTTCTCCAAAGGCAAAGCGCAAGAGAGGTGTAAAAATCAGCAGTGTGGCCTTGGACTCTATGCATTGGCAAAATGACTCTGTCCAAATCATAGCAAGTGCCAGTGATTTAAAAAGTATGGATGAGTTTCTTCTGAAAAAGATGAATGACCTAGATAATGAAGACAGCAAGAAGGATACATTAGTGGATGTTGTATTTAAAAAAGCCCTGAAAGAATTTCGGCAGAATATCTTCAGCTCTTATTCATCTGCATTGGCGATGGATGATGGGAAAAGCATCCGCTATAAAGACCTATATGCGCTATTTGAACAGATTCTGGAAAAAACCATGAGATTGGAGCAACGTGATTGGAATGAATCTCCAGTGAGAGTTTGGGTTAACACTTTTAAGGTGTTTTTAGATGAATACATGAATGAATTCAAGACTTTGGATAGCACAGCCCCAAAGGTGCTTAAAACAGAAAGAAAGAAAAGGAGGAAAAAGGAAACCGATTTGGTGGAAGAGCACAATGGCCACATCTTTAAGGCCACCCAGTATAGCATCCCTACATACTGTGAATACTGTTCTTCCTTGATATGGATAATGGACAGAGCCTCTGTTTGCAAATTGTGTAAGTACGCTTGCCATAAGAAGTGCTGCCTAAAAACCACAGCCAAGTGTTCTAAGAAGTATGATCCAGAGCTGTCATCTCGGCAATTTGGGGTTGAGCTGTCCCGTTTGACTAGTGAAGACCGAGCTGTTCCTTTAGTGGTAGAGAAGCTCATAAACTATATTGAAATGCATGGACTTTATACTGAAGGTATTTACCGAAAGTCTGGTTCAACTAATAAAATCAAGGAGCTTCGACAAGGTCTAGATACAGATGCTGAAAGTGTAAACCTAGATGACTATAACATACATGTCATTGCAAGTGTATTCAAACAATGGCTTCGTGATTTGCCCAATCCACTCATGACTTTTGAACTCTATGAAGAATTCCTTCGAGCTATGGGCCTTCAGGAAAGAAAAGAGACAATCCGTGGTGTGTACTCTGTAATTGATCAGCTCTCCCGAACTCATCTCAATACACTGGAACGCCTTATCTTTCATCTAGTTAGGATTGCTCTACAGGAAGACACTAATCGAATGTCTGCTAATGCTTTGGCCATTGTGTTTGCACCTTGCATTCTCCGTTGCCCTGACACTACTGACCCACTACAAAGTGTACAAGATATCAGTAAGACTACCACATGTGTGGAGCTGATAGTGGTAGAACAAATGAATAAATATAAGGCTCGTCTCAAAGACATCAGTAGCCTGGAATTTGCTGAAAATAAAGCAAAGACCAGACTGTCACTGATTCGTAGATCAATGGGAAAGGGGCGTATACACCGAGGAAACTATCCAAGTCCATCTTCCCCTGTTATAGTCCGATTGCCTTCCATGTCTGATGTCCCAGAAGAGACCTTGTCTAGTGAGACAGCCATGGAAACTGACCTCACAGACCAGCAGCAAGCAGCAATGCAGCAGGAGGAAAAAGTACTGACTGAGCAGATTGAGAACCTACAGAAAGAAAAGGAAGAACTAACATTTGAGATGCTTGTATTGGAACCTCGTGCCTCTGATGATGAAACCCTTGAATCTGAGGCTTCTATTGGGACTGCTGATAGTTCGGAAAATTTGAATATGGATTCTGAA
Peptide sequence:
MNTLNEKNQHDTFDIAWNVRTGIRQSRLPASNTSLLDKDGIFAHSASSKLLERAHGILTRNKNFRSKPVLPKHLLEVNSLKHLTRLTLQDRITKSLLHLHKKKKPPSISAQFQASLSKLMETLGQAEPYFVKCIRSNAEKLPLRFSDALVLRQLRYTGMLETVRIRQSGYSSKYSFQDFVSHFHVLLPQHIIPSKFNIQDFFRKININSDNYQVGKTMVFLKEHERQHLQDLLHQEVLRRIVLLQRWFRVLLSRQQFLHLRQASIIIQRFWRNYLNQKQVRNAAVEKDAFIMASAASLLQASWRAHLERQRYLELRAAAVIIQQRWRELYRCRHKAATCIQSRWRGYRQRKKYKEQRNKIILLQSIYRGFRARQRCNALKEEKLREAKLEHGLVHVKACGPLEIQGSDPSEWEDRSFDNRVKAIEECKYVIESNRISRESSMDFSKESPDKQQERGRRQSGTDLQEDVIVRQRPKSLEDLHQKKVGRAKRESRRMRELEQAIFSLELLKVRSLGGMSPSEERRWSTELMPEGLQSPHGTPDSESSQGSLELLTCDENQKSKPESLILDEGELKISSPNTFTNPKSQDNALSASSETSSTLAGKGASSDSEHLKNGTAKEKLVCSSEPITCKPQLRDSFVSSSLPTFFYIPHQEALKTSSHLDTSIQRNKLPEREAILKTTLTQDINREARKCQFSGDQMTPLNTDSSCTVLKKLEKLNIEKEKRQKQLQQQNEKEMMEQIRQQTDILEKERKAFKTIEQSRTEASVLAPSFYQPRQKVERPCSLYIQNTPSKGEAGVLGSPSAVTKRDAALATKDSPSIHLPPKDRPVTLFFEKKGSPCQSRTVKELPKTERTGTQHDAAYKLSNNRSTERDHFKSTHFYSHRSDDPSREGSSRAIFFTPKDNITPLVHSGNPQAHKQDESAWKPKLAGPGQQETSQRFSSVDEQAKLHKAMSQGEITKLAVRQKASDLDIRPQRAKMRFWAKGKQGEKKTTRVKPASQSEISSFFPGPDVTPAHPFSDELTQYHPTPPLSPELPGSCRKEFKENKEPSPKAKRKRGVKISSVALDSMHWQNDSVQIIASASDLKSMDEFLLKKMNDLDNEDSKKDTLVDVVFKKALKEFRQNIFSSYSSALAMDDGKSIRYKDLYALFEQILEKTMRLEQRDWNESPVRVWVNTFKVFLDEYMNEFKTLDSTAPKVLKTERKKRRKKETDLVEEHNGHIFKATQYSIPTYCEYCSSLIWIMDRASVCKLCKYACHKKCCLKTTAKCSKKYDPELSSRQFGVELSRLTSEDRAVPLVVEKLINYIEMHGLYTEGIYRKSGSTNKIKELRQGLDTDAESVNLDDYNIHVIASVFKQWLRDLPNPLMTFELYEEFLRAMGLQERKETIRGVYSVIDQLSRTHLNTLERLIFHLVRIALQEDTNRMSANALAIVFAPCILRCPDTTDPLQSVQDISKTTTCVELIVVEQMNKYKARLKDISSLEFAENKAKTRLSLIRRSMGKGRIHRGNYPSPSSPVIVRLPSMSDVPEETLSSETAMETDLTDQQQAAMQQEEKVLTEQIENLQKEKEELTFEMLVLEPRASDDETLESEASIGTADSSENLNMDSEGITRKNPRTPLSDLQGMNTLNEKNQHDTFDIAWNVRTGIRQSRLPASNTSLLDKDGIFAHSASSKLLERAHGILTRNKNFRSKPVLPKHLLEVNSLKHLTRLTLQDRITKSLLHLHKKKKPPSISAQFQASLSKLMETLGQAEPYFVKCIRSNAEKLPLRFSDALVLRQLRYTGMLETVRIRQSGYSSKYSFQDFVSHFHVLLPQHIIPSKFNIQDFFRKININSDNYQVGKTMVFLKEHERQHLQDLLHQEVLRRIVLLQRWFRVLLSRQQFLHLRQASIIIQRFWRNYLNQKQVRNAAVEKDAFIMASAASLLQASWRAHLERQRYLELRAAAVIIQQRWRELYRCRHKAATCIQSRWRGYRQRKKYKEQRNKIILLQSIYRGFRARQRCNALKEEKLREAKLEHGLVHVKACGPLEIQGSDPSEWEDRSFDNRVKAIEECKYVIESNRISRESSMDFSKESPDKQQERGRRQSGTDLQEDVIVRQRPKSLEDLHQKKVGRAKRESRRMRELEQAIFSLELLKVRSLGGMSPSEERRWSTELMPEGLQSPHGTPDSESSQGSLELLTCDENQKSKPESLILDEGELKISSPNTFTNPKSQDNALSASSETSSTLAGKGASSDSEHLKNGTAKEKLVCSSEPITCKPQLRDSFVSSSLPTFFYIPHQEALKTSSHLDTSIQRNKLPEREAILKTTLTQDINREARKCQFSGDQMTPLNTDSSCTVLKKLEKLNIEKEKRQKQLQQQNEKEMMEQIRQQTDILEKERKAFKTIEQSRTEASVLAPSFYQPRQKVERPCSLYIQNTPSKGEAGVLGSPSAVTKRDAALATKDSPSIHLPPKDRPVTLFFEKKGSPCQSRTVKELPKTERTGTQHDAAYKLSNNRSTERDHFKSTHFYSHRSDDPSREGSSRAIFFTPKDNITPLVHSGNPQAHKQDESAWKPKLAGPGQQETSQRFSSVDEQAKLHKAMSQGEITKLAVRQKASDLDIRPQRAKMRFWAKGKQGEKKTTRVKPASQSEISSFFPGPDVTPAHPFSDELTQYHPTPPLSPELPGSCRKEFKENKEPSPKAKRKRGVKISSVALDSMHWQNDSVQIIASASDLKSMDEFLLKKMNDLDNEDSKKDTLVDVVFKKALKEFRQNIFSSYSSALAMDDGKSIRYKDLYALFEQILEKTMRLEQRDWNESPVRVWVNTFKVFLDEYMNEFKTLDSTAPKVLKTERKKRRKKETDLVEEHNGHIFKATQYSIPTYCEYCSSLIWIMDRASVCKLCKYACHKKCCLKTTAKCSKKYDPELSSRQFGVELSRLTSEDRAVPLVVEKLINYIEMHGLYTEGIYRKSGSTNKIKELRQGLDTDAESVNLDDYNIHVIASVFKQWLRDLPNPLMTFELYEEFLRAMGLQERKETIRGVYSVIDQLSRTHLNTLERLIFHLVRIALQEDTNRMSANALAIVFAPCILRCPDTTDPLQSVQDISKTTTCVELIVVEQMNKYKARLKDISSLEFAENKAKTRLSLIRRSMGKGRIHRGNYPSPSSPVIVRLPSMSDVPEETLSSETAMETDLTDQQQAAMQQEEKVLTEQIENLQKEKEELTFEMLVLEPRASDDETLESEASIGTADSSENLNMDSE
IRESfinder result
IRESfinder score
0.625606062
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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