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mmu_circMtrr_1587
Basic information of circular RNA
PanCircBase ID:
mmu_circMtrr_1587
mm39_Chr. Position ID:
chr13|68714186|68728834|-
Gene name:
Mtrr
Transcript:
ENSMUST00000045827.5
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
10
Exon/intron indexes:
11,10,9,8,7,6,5,4,3,2
Exon/intron offsets:
0,874,2704,3936,5002,6510,8950,11520,13475,14483
Genomic length:
14648
Exon/intron sizes in nt:
1,87,43,18,18,91,54,12,00,00,00,00,00,000
Flanking exon/introns:
chr13:68713347-68714186|chr13:68728834-68730183
Splice length:
1587
Other database IDs:
CIRCpedia: HSA_CIRCpedia_52729
Human Ortholog IDs:
Mature spliced Sequence:
TCTCACTGTTAGAGTTGCAGCTGATGACCTGAGGTGATGAGAAGGTTTTTGTTACTTTATGCTACACAGCGAGGACAGGCAAAGGCCATAGCAGAAGAAATAAGTGAGCAGGCTGTGTCACACGGGTTTTCCGCAGATCTTCACTGTATCAGTGAGTCAGAAAAGTATGATCTGAAAACAGAAACTGGCCCTCTGGTGATGGTTGTATCTACCACGGGTACAGGAGACCCACCTGACACAGCCCGGAAGTTTGTTAAAGAAATACACAACAAGACACTCCCCACGGACTATTTTGCTCACCTGCAATATGGATTATTGGGCTTGGGTGACTCAGAATACACATACTTCTGCAATGGAGGGAAAGTAATTGATAAACGACTTCAGGAGCTTGGAGCCCAGCGTTTCTACGACACCGGACATGCCGATGACTGTGTCGGTTTAGAGCTTGTGGTAGAGCCGTGGATTGATGGACTCTGGGCTGCTCTCACAAAGCACTTTAAGTCACTCGGAGGACAAGAAAACATGAGTGACACACTCTCACGAGCATCAGATGCCCCCTTGAGCACTGCCATGAAGCCGGAGTTGTTGCACATCCAGTCACAAGTTGAACTGCTGAGATTAGAGGACATGGGGGAAAGGGATTCTGAGCTTCGGGAACAAAATGAGACAAACAGGGGTCAGCAGGGTCGGATCGAAGACTTTGACTCCTCGCTTGTGCACTCGGTCCCCCCACTCTCCCAGAGCTCTCTAAGTATTCCTGCTGTGCCCCCAGAGTATTTGGAGGTCCATCTTCAAGAGTCTCTTGGCCAGGAGGAAAACCAAGCATCTGTGCCTTCAGGGGATCCAAGTTTTCAAGTTCCAATTTCAAAAGCCATTCGGCTGACTACAAATGATGCCGTAAAGAGCACTCTGCTGTTGGAACTGGACATTTCAAAAATAGAGTTTTCCCATCAACCTGGAGACTCCTTCAATGTGACCTGTCCAAACAGTGATCGTGAGGTAGAAGAACTGCTCCAAAGGCTGCAGCTGGCTGATAAACGAGCTCACCGTGTCATCTTGAAAATTAAGACGGACACTAAGAAGAAAGGAGCTGCCCTGCCTGCGCATGTGCCTGAGGGGCGTTCTCTCCAGTTCATCCTCACCTGGTGTCTTGAAATACGAGCAGTTCCTAAAAAGGCCTTTTTGCGGGCCCTTGCCGAGCACACCAGCAGTGCCACTGAAAAGCGGAGGCTGCAGGAGCTGTGCAGTAAACAAGGAGCCGCTGATTACAACCGCTTCATCCGAGATGCCAGCGTCTGCCTGCTGGACCTCCTGCTCACCTTCCCGTCCTGCCAGCCTCCGCTCAGCCTACTGCTGGAGCACCTTCCTAAACTTCAGCCTCGACCGTACTCATGTGCAAGCTCCAGCTTACGTCACCCAGACAAGCTTCACTTCGTGTTTAACATCGTGGAGTTCCCACCTAGCACCACTGCAGCCTCCCTGAGGAAGGGAGTGTGCACGGGCTGGCTAGCCACATTGGTTGCTCCATTCCTTCAGCCAAACACAGACGTTTCGAATGTAGACAGTGGTGACGCTCTGGCTCCTGAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
AGCCACATTGGTTGCTCCAT
60.25
CCTGTCCTCGCTGTGTAGC
60.15
158
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
AGCCACATTGGTTGCTCCAT
60.25
GCCTGTCCTCGCTGTGTAG
60.15
159
PCR template sequence:
GGGAGTGTGCACGGGCTGGCTAGCCACATTGGTTGCTCCATTCCTTCAGCCAAACACAGACGTTTCGAATGTAGACAGTGGTGACGCTCTGGCTCCTGAGTCTCACTGTTAGAGTTGCAGCTGATGACCTGAGGTGATGAGAAGGTTTTTGTTACTTTATGCTACACAGCGAGGACAGGCAAAGGCCATAGCAGAAGAAA
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
24
Interacting miRNAs (#binding sites)
mmu-miR-124-3p(1), mmu-miR-23b-3p(1), mmu-miR-20b-5p(1), mmu-miR-134-5p(1), mmu-miR-106a-5p(1), mmu-miR-93-5p(1), mmu-miR-20a-5p(1), mmu-miR-17-5p(1), mmu-miR-135a-5p(1), mmu-miR-34a-5p(1), mmu-miR-122-5p(1), mmu-miR-204-5p(1), mmu-miR-106b-5p(1), mmu-miR-18a-5p(1), mmu-miR-216a-5p(1), mmu-miR-203-3p(1), mmu-miR-23a-3p(1), mmu-miR-10a-5p(1), mmu-miR-214-3p(1), mmu-miR-433-5p(1), mmu-miR-511-3p(1), mmu-miR-425-5p(1), mmu-miR-680(1), mmu-miR-344d-3p(1)
siRNAs for circular RNA silencing
Junction sequence
TCTGGCTCCTGAGTCTCACTGTTAGA
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCMTRR_1587_ORF_1
1.025
0.216482447
0.99984205
1563
ORF sequence:
ATGAGAAGGTTTTTGTTACTTTATGCTACACAGCGAGGACAGGCAAAGGCCATAGCAGAAGAAATAAGTGAGCAGGCTGTGTCACACGGGTTTTCCGCAGATCTTCACTGTATCAGTGAGTCAGAAAAGTATGATCTGAAAACAGAAACTGGCCCTCTGGTGATGGTTGTATCTACCACGGGTACAGGAGACCCACCTGACACAGCCCGGAAGTTTGTTAAAGAAATACACAACAAGACACTCCCCACGGACTATTTTGCTCACCTGCAATATGGATTATTGGGCTTGGGTGACTCAGAATACACATACTTCTGCAATGGAGGGAAAGTAATTGATAAACGACTTCAGGAGCTTGGAGCCCAGCGTTTCTACGACACCGGACATGCCGATGACTGTGTCGGTTTAGAGCTTGTGGTAGAGCCGTGGATTGATGGACTCTGGGCTGCTCTCACAAAGCACTTTAAGTCACTCGGAGGACAAGAAAACATGAGTGACACACTCTCACGAGCATCAGATGCCCCCTTGAGCACTGCCATGAAGCCGGAGTTGTTGCACATCCAGTCACAAGTTGAACTGCTGAGATTAGAGGACATGGGGGAAAGGGATTCTGAGCTTCGGGAACAAAATGAGACAAACAGGGGTCAGCAGGGTCGGATCGAAGACTTTGACTCCTCGCTTGTGCACTCGGTCCCCCCACTCTCCCAGAGCTCTCTAAGTATTCCTGCTGTGCCCCCAGAGTATTTGGAGGTCCATCTTCAAGAGTCTCTTGGCCAGGAGGAAAACCAAGCATCTGTGCCTTCAGGGGATCCAAGTTTTCAAGTTCCAATTTCAAAAGCCATTCGGCTGACTACAAATGATGCCGTAAAGAGCACTCTGCTGTTGGAACTGGACATTTCAAAAATAGAGTTTTCCCATCAACCTGGAGACTCCTTCAATGTGACCTGTCCAAACAGTGATCGTGAGGTAGAAGAACTGCTCCAAAGGCTGCAGCTGGCTGATAAACGAGCTCACCGTGTCATCTTGAAAATTAAGACGGACACTAAGAAGAAAGGAGCTGCCCTGCCTGCGCATGTGCCTGAGGGGCGTTCTCTCCAGTTCATCCTCACCTGGTGTCTTGAAATACGAGCAGTTCCTAAAAAGGCCTTTTTGCGGGCCCTTGCCGAGCACACCAGCAGTGCCACTGAAAAGCGGAGGCTGCAGGAGCTGTGCAGTAAACAAGGAGCCGCTGATTACAACCGCTTCATCCGAGATGCCAGCGTCTGCCTGCTGGACCTCCTGCTCACCTTCCCGTCCTGCCAGCCTCCGCTCAGCCTACTGCTGGAGCACCTTCCTAAACTTCAGCCTCGACCGTACTCATGTGCAAGCTCCAGCTTACGTCACCCAGACAAGCTTCACTTCGTGTTTAACATCGTGGAGTTCCCACCTAGCACCACTGCAGCCTCCCTGAGGAAGGGAGTGTGCACGGGCTGGCTAGCCACATTGGTTGCTCCATTCCTTCAGCCAAACACAGACGTTTCGAATGTAGACAGTGGTGACGCTCTGGCTCCTGAGTCTCACTGTTAG
Peptide sequence:
MRRFLLLYATQRGQAKAIAEEISEQAVSHGFSADLHCISESEKYDLKTETGPLVMVVSTTGTGDPPDTARKFVKEIHNKTLPTDYFAHLQYGLLGLGDSEYTYFCNGGKVIDKRLQELGAQRFYDTGHADDCVGLELVVEPWIDGLWAALTKHFKSLGGQENMSDTLSRASDAPLSTAMKPELLHIQSQVELLRLEDMGERDSELREQNETNRGQQGRIEDFDSSLVHSVPPLSQSSLSIPAVPPEYLEVHLQESLGQEENQASVPSGDPSFQVPISKAIRLTTNDAVKSTLLLELDISKIEFSHQPGDSFNVTCPNSDREVEELLQRLQLADKRAHRVILKIKTDTKKKGAALPAHVPEGRSLQFILTWCLEIRAVPKKAFLRALAEHTSSATEKRRLQELCSKQGAADYNRFIRDASVCLLDLLLTFPSCQPPLSLLLEHLPKLQPRPYSCASSSLRHPDKLHFVFNIVEFPPSTTAASLRKGVCTGWLATLVAPFLQPNTDVSNVDSGDALAPESHC
IRESfinder result
IRESfinder score
0.563198883
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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