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mmu_circMacir_90
Basic information of circular RNA
PanCircBase ID:
mmu_circMacir_90
mm39_Chr. Position ID:
chr1|97582324|97582414|-
Gene name:
Macir
Transcript:
ENSMUST00000053033.14
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
1
Exon/intron indexes:
2
Exon/intron offsets:
0
Genomic length:
90
Exon/intron sizes in nt:
90
Flanking exon/introns:
chr1:97574086-97582324|chr1:97582414-97589555
Splice length:
90
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
TATCTGGACTAGAACAGAAAACTTATTATGCCTGTGCTCCCTTGGGACACTTTGGAACTTGCACAGTGACATCATCTGGGATTTAGTCTG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
GCACAGTGACATCATCTGGGA
60.07
CCAAGGGAGCACAGGCATAA
60.03
75
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
TGCACAGTGACATCATCTGGG
60.34
CCAAGGGAGCACAGGCATAA
60.03
76
PCR template sequence:
GACACTTTGGAACTTGCACAGTGACATCATCTGGGATTTAGTCTGTATCTGGACTAGAACAGAAAACTTATTATGCCTGTGCTCCCTTGG
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
NA
Interacting miRNAs (#binding sites)
NA
siRNAs for circular RNA silencing
Junction sequence
GGGATTTAGTCTGTATCTGGACTAGA
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.762484566
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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