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mmu_circLrpprc_1581
Basic information of circular RNA
PanCircBase ID:
mmu_circLrpprc_1581
mm39_Chr. Position ID:
chr17|85047497|85077533|-
Gene name:
Lrpprc
Transcript:
ENSMUST00000112308.9
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
16
Exon/intron indexes:
25,24,23,22,21,20,19,18,17,16,15,14,13,12,11,10
Exon/intron offsets:
0,474,8891,10438,11154,12239,12659,13044,13335,14471,16188,21882,24382,26923,29525,29930
Genomic length:
30036
Exon/intron sizes in nt:
10,71,25,20,88,61,31,10,00,00,00,00,00,00,00,00,00,00,00,000
Flanking exon/introns:
chr17:85039245-85047497|chr17:85077533-85077781
Splice length:
1581
Other database IDs:
CIRCpedia: MMU_CIRCpedia_31777, circAtlas: mmu-Lrpprc_0040
circAtlas: hsa-LRPPRC_0025
Human Ortholog IDs:
Mature spliced Sequence:
CCCCCTGAGAAGCTGATAGACTACTGTCGGAGGCTGAGGGACGCCAAGCTGCACAGCTCCTCACTGCAGTTCACGCTGCACTGTGCTCTTCAAGCCAATAGGACAGCTTTGGCAAAAGCAGTGATGGAGGCTTTGAGGGAAGAAGGGTTTCCTATCCGACCGCACTATTTCTGGCCGTTGCTTGCTGGGCATCAGAAAACAAAAAATGTTCAAGGAATAATAGATATCCTCAAAATAATGAACAAAGTGGGAGTGGATCCTGATCAGGAAACATATATAAACTATGTGTTTCCGTGCTTTGATAGTGCACAGTCAGTTCGAGCTGCTTTGCAGGAAAATGAATGTCTCCTCGCAAGTAGTACCTTTGCTCAAGCTGAAGTGAAGAATGAAGCAATAAATGGGAACTTACAGAACATTTTGTCATTTTTGGAATCGAATACATTGCCTTTCTCGTTTAGTTCTTTGAGAAACAGCCTAATCCTAGGCTTCAGGAGGTCGATGAACATAGATCTTTGGAGCAAGATAACAGAATTGTTGTACAAGGATGAACGCTATTGCTCAAAGCCTCCGGGACCAGCGGAAGCTGTTGGCTATTTTCTTTATAACTTGATTGACAGCATGAGTGACTCAGAGGTACAGGCCAAGGAGGAGCGTTTGAGACAATACTTCCATCAGCTGCAGGAGATGAATGTTAAAGTTCCTGAAAACATCTACAAAGGCATTTGTAATTTGCTGAATACCTACCATGTTCCTGAATTGATTAAGGATATTAAGGTTCTGGTTGACAGAGAGAAGGTAGATTCTCAAAAAACTTCTCAAGTTACCTCATCTGATTTGGAATCAACACTTGAGAAACTCAAAGCTGAAGGCCAACCTGTAGGATCTGCCCTGAAGCAGCTCCTGCTGCTGCTCTGCTCAGAGGAGAATATGCAAAAGGCCCTTGAGGTGAAAGCAAAATATGAGTCAGACATGGTTATTGGTGGCTATGCAGCATTAATAAATTTGTGCTGTCGACATGATAATGCAGAAGATGCGTGGAACTTGAAACAAGAAGTTGACCGCTTAGATGCTTCGGCTATTCTTGACACTGCCAAGTACGTAGCCCTTGTAAAAGTACTGGGAAAGCACAGCAGACTCCAAGATGCTATTAACATTCTAAAGGAGATGAAAGAGAAGGATGTTGTTATCAAAGATGCAACAGTCTTGTCCTTTTTCCACATCCTCAATGGTGCAGCTTTAAGAGGTGAAATTGAAACAGTAAAACAGCTGCATGAAGCCATCGTGACTCTTGGGTTGGCAAAGCCGTCCAGCAACATAAGCTTCCCGTTGGTCACTGTGCACCTGGAAAAGGGTGACTTACCTGCTGCTCTTGAAGCCAGCATTGCCTGCCATAAAAAATATAAAGTGTTACCCAGGATTCATGATGTCTTATGTAAGCTAGTAGAGAAAGGCGAGACTGATTTGATCCAGAAAGCAATGGACTTTGTGAGCCAAGAACAAGGGGAGATGACGATGCTCTACGACCTCTTCTTTGCTTTCCTGCAGACGGGGAATTACAAAGAAGCTAAGAAGATCATTGAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
AGGGGAGATGACGATGCTCT
60.11
TGAACTGCAGTGAGGAGCTG
59.97
155
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
AGGGGAGATGACGATGCTCT
60.11
GAACTGCAGTGAGGAGCTGT
59.97
154
PCR template sequence:
CTTTGTGAGCCAAGAACAAGGGGAGATGACGATGCTCTACGACCTCTTCTTTGCTTTCCTGCAGACGGGGAATTACAAAGAAGCTAAGAAGATCATTGAGCCCCCTGAGAAGCTGATAGACTACTGTCGGAGGCTGAGGGACGCCAAGCTGCACAGCTCCTCACTGCAGTTCACGCTGCACTGTGCTCTTCAAGCCAATA
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
21
Interacting miRNAs (#binding sites)
mmu-miR-181b-5p(2), mmu-miR-153-3p(2), mmu-miR-181d-5p(2), mmu-miR-137-3p(1), mmu-miR-16-5p(1), mmu-miR-181a-5p(1), mmu-miR-34c-5p(1), mmu-miR-34a-5p(1), mmu-miR-322-5p(1), mmu-miR-15b-5p(1), mmu-miR-152-3p(1), mmu-miR-148b-3p(1), mmu-miR-320-3p(1), mmu-miR-214-3p(1), mmu-miR-503-5p(1), mmu-miR-199b-3p(1), mmu-miR-199a-3p(1), mmu-miR-340-5p(1), mmu-miR-34b-5p(1), mmu-miR-5101(1), mmu-miR-350-3p(1)
siRNAs for circular RNA silencing
Junction sequence
GAAGATCATTGAGCCCCCTGAGAAGC
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCLRPPRC_1581_ORF_1
1.0093
0.143679419
0.999999995
3039
ORF sequence:
ATGGAGGCTTTGAGGGAAGAAGGGTTTCCTATCCGACCGCACTATTTCTGGCCGTTGCTTGCTGGGCATCAGAAAACAAAAAATGTTCAAGGAATAATAGATATCCTCAAAATAATGAACAAAGTGGGAGTGGATCCTGATCAGGAAACATATATAAACTATGTGTTTCCGTGCTTTGATAGTGCACAGTCAGTTCGAGCTGCTTTGCAGGAAAATGAATGTCTCCTCGCAAGTAGTACCTTTGCTCAAGCTGAAGTGAAGAATGAAGCAATAAATGGGAACTTACAGAACATTTTGTCATTTTTGGAATCGAATACATTGCCTTTCTCGTTTAGTTCTTTGAGAAACAGCCTAATCCTAGGCTTCAGGAGGTCGATGAACATAGATCTTTGGAGCAAGATAACAGAATTGTTGTACAAGGATGAACGCTATTGCTCAAAGCCTCCGGGACCAGCGGAAGCTGTTGGCTATTTTCTTTATAACTTGATTGACAGCATGAGTGACTCAGAGGTACAGGCCAAGGAGGAGCGTTTGAGACAATACTTCCATCAGCTGCAGGAGATGAATGTTAAAGTTCCTGAAAACATCTACAAAGGCATTTGTAATTTGCTGAATACCTACCATGTTCCTGAATTGATTAAGGATATTAAGGTTCTGGTTGACAGAGAGAAGGTAGATTCTCAAAAAACTTCTCAAGTTACCTCATCTGATTTGGAATCAACACTTGAGAAACTCAAAGCTGAAGGCCAACCTGTAGGATCTGCCCTGAAGCAGCTCCTGCTGCTGCTCTGCTCAGAGGAGAATATGCAAAAGGCCCTTGAGGTGAAAGCAAAATATGAGTCAGACATGGTTATTGGTGGCTATGCAGCATTAATAAATTTGTGCTGTCGACATGATAATGCAGAAGATGCGTGGAACTTGAAACAAGAAGTTGACCGCTTAGATGCTTCGGCTATTCTTGACACTGCCAAGTACGTAGCCCTTGTAAAAGTACTGGGAAAGCACAGCAGACTCCAAGATGCTATTAACATTCTAAAGGAGATGAAAGAGAAGGATGTTGTTATCAAAGATGCAACAGTCTTGTCCTTTTTCCACATCCTCAATGGTGCAGCTTTAAGAGGTGAAATTGAAACAGTAAAACAGCTGCATGAAGCCATCGTGACTCTTGGGTTGGCAAAGCCGTCCAGCAACATAAGCTTCCCGTTGGTCACTGTGCACCTGGAAAAGGGTGACTTACCTGCTGCTCTTGAAGCCAGCATTGCCTGCCATAAAAAATATAAAGTGTTACCCAGGATTCATGATGTCTTATGTAAGCTAGTAGAGAAAGGCGAGACTGATTTGATCCAGAAAGCAATGGACTTTGTGAGCCAAGAACAAGGGGAGATGACGATGCTCTACGACCTCTTCTTTGCTTTCCTGCAGACGGGGAATTACAAAGAAGCTAAGAAGATCATTGAGCCCCCTGAGAAGCTGATAGACTACTGTCGGAGGCTGAGGGACGCCAAGCTGCACAGCTCCTCACTGCAGTTCACGCTGCACTGTGCTCTTCAAGCCAATAGGACAGCTTTGGCAAAAGCAGTGATGGAGGCTTTGAGGGAAGAAGGGTTTCCTATCCGACCGCACTATTTCTGGCCGTTGCTTGCTGGGCATCAGAAAACAAAAAATGTTCAAGGAATAATAGATATCCTCAAAATAATGAACAAAGTGGGAGTGGATCCTGATCAGGAAACATATATAAACTATGTGTTTCCGTGCTTTGATAGTGCACAGTCAGTTCGAGCTGCTTTGCAGGAAAATGAATGTCTCCTCGCAAGTAGTACCTTTGCTCAAGCTGAAGTGAAGAATGAAGCAATAAATGGGAACTTACAGAACATTTTGTCATTTTTGGAATCGAATACATTGCCTTTCTCGTTTAGTTCTTTGAGAAACAGCCTAATCCTAGGCTTCAGGAGGTCGATGAACATAGATCTTTGGAGCAAGATAACAGAATTGTTGTACAAGGATGAACGCTATTGCTCAAAGCCTCCGGGACCAGCGGAAGCTGTTGGCTATTTTCTTTATAACTTGATTGACAGCATGAGTGACTCAGAGGTACAGGCCAAGGAGGAGCGTTTGAGACAATACTTCCATCAGCTGCAGGAGATGAATGTTAAAGTTCCTGAAAACATCTACAAAGGCATTTGTAATTTGCTGAATACCTACCATGTTCCTGAATTGATTAAGGATATTAAGGTTCTGGTTGACAGAGAGAAGGTAGATTCTCAAAAAACTTCTCAAGTTACCTCATCTGATTTGGAATCAACACTTGAGAAACTCAAAGCTGAAGGCCAACCTGTAGGATCTGCCCTGAAGCAGCTCCTGCTGCTGCTCTGCTCAGAGGAGAATATGCAAAAGGCCCTTGAGGTGAAAGCAAAATATGAGTCAGACATGGTTATTGGTGGCTATGCAGCATTAATAAATTTGTGCTGTCGACATGATAATGCAGAAGATGCGTGGAACTTGAAACAAGAAGTTGACCGCTTAGATGCTTCGGCTATTCTTGACACTGCCAAGTACGTAGCCCTTGTAAAAGTACTGGGAAAGCACAGCAGACTCCAAGATGCTATTAACATTCTAAAGGAGATGAAAGAGAAGGATGTTGTTATCAAAGATGCAACAGTCTTGTCCTTTTTCCACATCCTCAATGGTGCAGCTTTAAGAGGTGAAATTGAAACAGTAAAACAGCTGCATGAAGCCATCGTGACTCTTGGGTTGGCAAAGCCGTCCAGCAACATAAGCTTCCCGTTGGTCACTGTGCACCTGGAAAAGGGTGACTTACCTGCTGCTCTTGAAGCCAGCATTGCCTGCCATAAAAAATATAAAGTGTTACCCAGGATTCATGATGTCTTATGTAAGCTAGTAGAGAAAGGCGAGACTGATTTGATCCAGAAAGCAATGGACTTTGTGAGCCAAGAACAAGGGGAGATGACGATGCTCTACGACCTCTTCTTTGCTTTCCTGCAGACGGGGAATTACAAAGAAGCTAAGAAGATCATTGAG
Peptide sequence:
MEALREEGFPIRPHYFWPLLAGHQKTKNVQGIIDILKIMNKVGVDPDQETYINYVFPCFDSAQSVRAALQENECLLASSTFAQAEVKNEAINGNLQNILSFLESNTLPFSFSSLRNSLILGFRRSMNIDLWSKITELLYKDERYCSKPPGPAEAVGYFLYNLIDSMSDSEVQAKEERLRQYFHQLQEMNVKVPENIYKGICNLLNTYHVPELIKDIKVLVDREKVDSQKTSQVTSSDLESTLEKLKAEGQPVGSALKQLLLLLCSEENMQKALEVKAKYESDMVIGGYAALINLCCRHDNAEDAWNLKQEVDRLDASAILDTAKYVALVKVLGKHSRLQDAINILKEMKEKDVVIKDATVLSFFHILNGAALRGEIETVKQLHEAIVTLGLAKPSSNISFPLVTVHLEKGDLPAALEASIACHKKYKVLPRIHDVLCKLVEKGETDLIQKAMDFVSQEQGEMTMLYDLFFAFLQTGNYKEAKKIIEPPEKLIDYCRRLRDAKLHSSSLQFTLHCALQANRTALAKAVMEALREEGFPIRPHYFWPLLAGHQKTKNVQGIIDILKIMNKVGVDPDQETYINYVFPCFDSAQSVRAALQENECLLASSTFAQAEVKNEAINGNLQNILSFLESNTLPFSFSSLRNSLILGFRRSMNIDLWSKITELLYKDERYCSKPPGPAEAVGYFLYNLIDSMSDSEVQAKEERLRQYFHQLQEMNVKVPENIYKGICNLLNTYHVPELIKDIKVLVDREKVDSQKTSQVTSSDLESTLEKLKAEGQPVGSALKQLLLLLCSEENMQKALEVKAKYESDMVIGGYAALINLCCRHDNAEDAWNLKQEVDRLDASAILDTAKYVALVKVLGKHSRLQDAINILKEMKEKDVVIKDATVLSFFHILNGAALRGEIETVKQLHEAIVTLGLAKPSSNISFPLVTVHLEKGDLPAALEASIACHKKYKVLPRIHDVLCKLVEKGETDLIQKAMDFVSQEQGEMTMLYDLFFAFLQTGNYKEAKKIIE
IRESfinder result
IRESfinder score
0.566437479
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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