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mmu_circKif1b_3432
Basic information of circular RNA
PanCircBase ID:
mmu_circKif1b_3432
mm39_Chr. Position ID:
chr4|149268765|149336273|-
Gene name:
Kif1b
Transcript:
ENSMUST00000060537.13
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
29
Exon/intron indexes:
45,44,43,42,41,40,39,38,37,36,35,34,33,32,31,30,29,28,27,26,25,24,23,22,21,20,19,18,17
Exon/intron offsets:
0,1794,3282,3690,5414,6840,8264,14123,14949,18199,19877,22409,23540,25733,28987,29314,29770,30598,36233,37918,38921,40781,41954,61029,61233,62028,62919,63496,67432
Genomic length:
67508
Exon/intron sizes in nt:
122,72,240,146,62,134,115,106,85,67,109,56,119,91,163,130,86,119,249,138,179,149,94,73,181,84,107,80,76
Flanking exon/introns:
chr4:149266874-149268765|chr4:149336273-149338128
Splice length:
3432
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
AGAAGCCTTGTTGGCTGAGATGGGAGTTGCCATACGGGAAGATGGGGGGACACTTGGAGTTTTCTCTCCTAAAAAGACCCCACATCTTGTTAACCTCAATGAAGACCCATTAATGTCGGAGTGTTTGCTCTATTACATCAAGGATGGAATTACAAGGGTTGGCCAGGCAGATGCTGAGCGGCGCCAGGACATAGTGCTGAGTGGGGCCCACATTAAAGAGGAGCATTGTCTCTTTCGGAGTGAGAGGAGCAACACTGGTGAAGTTATTGTGACCTTGGAGCCCTGTGAGCGCTCAGAAACATACGTGAATGGCAAGAGGGTGGCTCATCCTGTTCAGCTGCGCTCAGGGAACCGTATCATCATGGGTAAAAACCATGTTTTTCGTTTTAACCACCCTGAACAAGCGCGAGCAGAAAGGGAAAAGACTCCCTCAGCTGAGACCCCCTCTGAGCCTGTGGACTGGACCTTTGCTCAGAGAGAGCTTCTCGAAAAACAAGGAATTGATATGAAACAGGAGATGGAAAAGAGGCTTCAGGAAATGGAGATCCTTTACAAAAAGGAGAAGGAGGAAGCCGATCTTCTCCTGGAGCAGCAGAGACTGGACTACGAGAGTAAATTGCAGGCCTTGCAGAGGCAGGTTGAGACTCGATCTCTGGCTGCAGAGACAACGGAAGAGGAGGAAGAGGAGGAGGAAGTTCCTTGGACACAGCATGAATTTGAGTTGGCCCAGTGGGCGTTCCGGAAATGGAAGTCTCACCAGTTTACTTCATTAAGGGACTTACTCTGGGGCAATGCGGTGTACCTGAAGGAAGCCAATGCCATCAGTGTGGAACTAAAGAAAAAGGTGCAGTTCCAGTTTGTTCTGCTGACTGACACGCTGTACTCCCCTGTGCCTCCTGAACTGCTTCCCTCGGAGATGGAGAAGACGCACGAGGACAGACCTTTCCCTCGGACTGTGGTGGCGGTGGAGGTCCAGGATCTGAAGAATGGAGCAACACATTATTGGTCTTTGGATAAACTCAAGCAGAGACTGGATCTGATGCGAGAGATGTATGACAGGGCAGGGGAGGTGGCCTCCAGTGCCCAAGATGACAGCGAGACGACCATGACCGGCAGCGACCCATTCTACGATCGGTTCCACTGGTTCAAACTTGTGGGAAGCTCCCCTATTTTCCACGGCTGTGTGAATGAGCGCCTTGCCGACCGCACACCCTCCCCCACTTTTTCCACGGCCGATTCCGACATCACTGAACTGGCTGACGAGCAGCAGGATGCCATGGAGGACTTTGATGATGAGGCATTCGTGGATGACACCGGCTCTGACGCAGGGACGGAAGAGGGATCAGAGCTCTTCAGTGATGGGCATGACCCATTTTACGACCGATCCCCTTGGTTCATTTTAGTAGGAAGGGCATTTGTGTACTTGAGCAACCTGCTGTATCCGGTGCCCCTGATTCACAGGGTGGCCATTGTCAGTGAGAAGGGGGAAGTCCGGGGATTTCTTCGTGTGGCTGTGCAGGCCATTGCAGCGGATGAAGAAGCCCCTGATTATGGCTCTGGAATCCGGCAGTCGGGAACAGCTAAAATATCTTTTGATAATGAATACTTTAATCAGAGTGACTTCTCGTCAGCTGCAATGACTCGTTCTGGTCTGTCCTTGGAGGAGCTGAGGATTGTGGAAGGTCAGGGCCAGAGTTCTGAAGTCATCAGTCCTCCAGAAGAAGTCAATCGAATGAACGACCTGGATTTGAAGTCAGGCACTTTGCTGGATGGGAAGATGGTGATGGAAGGGTTTTCTGAAGAGATTGGTAACCACCTGAAGCTGGGCAGTGCCTTCACTTTCCGAGTCACTGTGCTCCAAGCCAGCGGGATCCTTCCAGAGTATGCAGACATCTTCTGTCAGTTCAACTTTTTGCATCGGCATGATGAAGCGTTCTCCACTGAACCCCTCAAGAACAATGGAAGAGGAAGTCCCCTGGGCTTCTACCATGTACAGAACATTGCGGTGGAGGTCACAGAGTCGTTTGTGGACTACATCAAAACCAAGCCCATTGTATTCGAGGTCTTTGGGCACTACCAGCAGCACCCACTCCATCTGCAAGGACAAGATCTTAACAGTCCACCTCAGCCATCTCGGAGATTCTTCCCCCCACCCATGCCACTCTCCAAGCCAGTTCCAGCTACTAAGTTAAACACCATGAACAAAACCACCCTTGGGCAAAGCATGAGCAAGTACGACCTTCTGGTTTGGTTTGAGATCAGTGAACTGGAGCCTACTGGAGAGTATATTCCAGCTGTGGTTGACCATACTGCAGGCCTGCCCTGCCAGGGGACATTTTTGCTGCACCAGGGCATCCAGCGACGGATCACAGTGACTATCATCCACGAGAAGGGCAGTGAGCTCCACTGGAAAGATGTCCGTGAGCTGGTGGTAGGTCGGATTAGGAATAAACCGGAGGTAGATGAAGCTGCAGTTGATGCTGTTCTTTCCCTGAACATCATCTCTGCTAAGTCCCTGAAGGCTGCCCACAGCTCCAGCAGGACCTTCTACCGTTTCGAGGCAGTATGGGACAGCTCCCTACATAACTCCCTCCTTCTGAACCGAGTGACACCCTATGGAGAAAAGATCTACATGACCTTATCTGCTTATCTGGAGTTGGATCATTGCATCCAGCCGGCCGTCATCACTAAGGATGTGTGCATGGTCTTCTATTCCCGAGATGCCAAGATCTCACCACCGCGTTCTCTGCGAAACCTCTTTGGTAGTGGCTACTCAAAGTCACCAGACTCCAACCGAGTGACTGGGATCTATGAGCTGAGCTTATGCAAAATGGCAGATACTGGAAGCCCAGGCATGCAGAGGCGGAGGAGAAAAGTCTTGGATACCTCAGTGGCATATGTGCGGGGAGAGGAGAACCTAGCGGGCTGGCGACCTCGTGGAGACAGCCTCATTCTGGAACACCAGTGGGAGCTGGAGAAGCTGGAGCTGCTGCATGAGGTGGAAAAAACTCGCCACTTCTTGCTGCTTCGGGAGAGACTTGGTGACAGCGTCCCTAAGTCTCTGAGTGACTCACTGTCCCCCAGCCTGAGCAGTGGAACCCTTAGCACCTCCACCAGCATCTCCTCTCAGATCTCAACCACCACCTTTGAAAGCGCCATCACACCGAGCGAGAGCAGTGGCTACGACTCGGCAGACGTTGAAAGCCTGGTCGACCGGGAGAAAGAGCTGGCTACAAAGTGCCTGCAGCTTCTCACCCACACTTTCAACCGAGAATTCAGCCAGGTGCACGGCAGCATCAGTGACTGTAAGTTGTCTGACATCTCTCCAATTGGACGGGACCCCTCTGTGTCCAGTTTCAGCAGTTCCACCCTCACGCCCTCCTCCACTTGCCCCTCCTTGGTGGACTCCAGGAGCAGCTCTATGGATCAGAA
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
ACCCCTCTGTGTCCAGTTTC
59.23
CCCATCTTCCCGTATGGCAA
59.82
140
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
GACCCCTCTGTGTCCAGTTT
59.23
CCCATCTTCCCGTATGGCAA
59.82
141
PCR template sequence:
GACGGGACCCCTCTGTGTCCAGTTTCAGCAGTTCCACCCTCACGCCCTCCTCCACTTGCCCCTCCTTGGTGGACTCCAGGAGCAGCTCTATGGATCAGAAAGAAGCCTTGTTGGCTGAGATGGGAGTTGCCATACGGGAAGATGGGGGGACACTTGGAGTTTTCTCTCCTAAAAAGACCCCACATCTTGTTAACCTCAAT
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
27
Interacting miRNAs (#binding sites)
mmu-miR-20b-5p(1), mmu-miR-296-5p(1), mmu-miR-15a-5p(1), mmu-miR-106a-5p(1), mmu-miR-93-5p(1), mmu-miR-20a-5p(1), mmu-miR-17-5p(1), mmu-miR-200b-3p(1), mmu-miR-106b-5p(1), mmu-miR-328-3p(1), mmu-miR-138-5p(1), mmu-miR-185-5p(1), mmu-miR-10a-5p(1), mmu-miR-495-3p(1), mmu-miR-214-3p(1), mmu-miR-128-3p(1), mmu-miR-136-5p(1), mmu-miR-127-3p(1), mmu-miR-153-3p(1), mmu-miR-370-3p(1), mmu-miR-324-3p(1), mmu-miR-224-5p(1), mmu-miR-207(1), mmu-miR-484(1), mmu-miR-452-3p(1), mmu-miR-670-5p(1), mmu-miR-1904(1)
siRNAs for circular RNA silencing
Junction sequence
CTATGGATCAGAAAGAAGCCTTGTTG
siRNA sets
CAACAAGGCTTCTTTCTGA, AACAAGGCTTCTTTCTGAT, ACAAGGCTTCTTTCTGATC
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCKIF1B_3432_ORF_1
1.1177
0.35784577
1
6843
ORF sequence:
ATGGGAGTTGCCATACGGGAAGATGGGGGGACACTTGGAGTTTTCTCTCCTAAAAAGACCCCACATCTTGTTAACCTCAATGAAGACCCATTAATGTCGGAGTGTTTGCTCTATTACATCAAGGATGGAATTACAAGGGTTGGCCAGGCAGATGCTGAGCGGCGCCAGGACATAGTGCTGAGTGGGGCCCACATTAAAGAGGAGCATTGTCTCTTTCGGAGTGAGAGGAGCAACACTGGTGAAGTTATTGTGACCTTGGAGCCCTGTGAGCGCTCAGAAACATACGTGAATGGCAAGAGGGTGGCTCATCCTGTTCAGCTGCGCTCAGGGAACCGTATCATCATGGGTAAAAACCATGTTTTTCGTTTTAACCACCCTGAACAAGCGCGAGCAGAAAGGGAAAAGACTCCCTCAGCTGAGACCCCCTCTGAGCCTGTGGACTGGACCTTTGCTCAGAGAGAGCTTCTCGAAAAACAAGGAATTGATATGAAACAGGAGATGGAAAAGAGGCTTCAGGAAATGGAGATCCTTTACAAAAAGGAGAAGGAGGAAGCCGATCTTCTCCTGGAGCAGCAGAGACTGGACTACGAGAGTAAATTGCAGGCCTTGCAGAGGCAGGTTGAGACTCGATCTCTGGCTGCAGAGACAACGGAAGAGGAGGAAGAGGAGGAGGAAGTTCCTTGGACACAGCATGAATTTGAGTTGGCCCAGTGGGCGTTCCGGAAATGGAAGTCTCACCAGTTTACTTCATTAAGGGACTTACTCTGGGGCAATGCGGTGTACCTGAAGGAAGCCAATGCCATCAGTGTGGAACTAAAGAAAAAGGTGCAGTTCCAGTTTGTTCTGCTGACTGACACGCTGTACTCCCCTGTGCCTCCTGAACTGCTTCCCTCGGAGATGGAGAAGACGCACGAGGACAGACCTTTCCCTCGGACTGTGGTGGCGGTGGAGGTCCAGGATCTGAAGAATGGAGCAACACATTATTGGTCTTTGGATAAACTCAAGCAGAGACTGGATCTGATGCGAGAGATGTATGACAGGGCAGGGGAGGTGGCCTCCAGTGCCCAAGATGACAGCGAGACGACCATGACCGGCAGCGACCCATTCTACGATCGGTTCCACTGGTTCAAACTTGTGGGAAGCTCCCCTATTTTCCACGGCTGTGTGAATGAGCGCCTTGCCGACCGCACACCCTCCCCCACTTTTTCCACGGCCGATTCCGACATCACTGAACTGGCTGACGAGCAGCAGGATGCCATGGAGGACTTTGATGATGAGGCATTCGTGGATGACACCGGCTCTGACGCAGGGACGGAAGAGGGATCAGAGCTCTTCAGTGATGGGCATGACCCATTTTACGACCGATCCCCTTGGTTCATTTTAGTAGGAAGGGCATTTGTGTACTTGAGCAACCTGCTGTATCCGGTGCCCCTGATTCACAGGGTGGCCATTGTCAGTGAGAAGGGGGAAGTCCGGGGATTTCTTCGTGTGGCTGTGCAGGCCATTGCAGCGGATGAAGAAGCCCCTGATTATGGCTCTGGAATCCGGCAGTCGGGAACAGCTAAAATATCTTTTGATAATGAATACTTTAATCAGAGTGACTTCTCGTCAGCTGCAATGACTCGTTCTGGTCTGTCCTTGGAGGAGCTGAGGATTGTGGAAGGTCAGGGCCAGAGTTCTGAAGTCATCAGTCCTCCAGAAGAAGTCAATCGAATGAACGACCTGGATTTGAAGTCAGGCACTTTGCTGGATGGGAAGATGGTGATGGAAGGGTTTTCTGAAGAGATTGGTAACCACCTGAAGCTGGGCAGTGCCTTCACTTTCCGAGTCACTGTGCTCCAAGCCAGCGGGATCCTTCCAGAGTATGCAGACATCTTCTGTCAGTTCAACTTTTTGCATCGGCATGATGAAGCGTTCTCCACTGAACCCCTCAAGAACAATGGAAGAGGAAGTCCCCTGGGCTTCTACCATGTACAGAACATTGCGGTGGAGGTCACAGAGTCGTTTGTGGACTACATCAAAACCAAGCCCATTGTATTCGAGGTCTTTGGGCACTACCAGCAGCACCCACTCCATCTGCAAGGACAAGATCTTAACAGTCCACCTCAGCCATCTCGGAGATTCTTCCCCCCACCCATGCCACTCTCCAAGCCAGTTCCAGCTACTAAGTTAAACACCATGAACAAAACCACCCTTGGGCAAAGCATGAGCAAGTACGACCTTCTGGTTTGGTTTGAGATCAGTGAACTGGAGCCTACTGGAGAGTATATTCCAGCTGTGGTTGACCATACTGCAGGCCTGCCCTGCCAGGGGACATTTTTGCTGCACCAGGGCATCCAGCGACGGATCACAGTGACTATCATCCACGAGAAGGGCAGTGAGCTCCACTGGAAAGATGTCCGTGAGCTGGTGGTAGGTCGGATTAGGAATAAACCGGAGGTAGATGAAGCTGCAGTTGATGCTGTTCTTTCCCTGAACATCATCTCTGCTAAGTCCCTGAAGGCTGCCCACAGCTCCAGCAGGACCTTCTACCGTTTCGAGGCAGTATGGGACAGCTCCCTACATAACTCCCTCCTTCTGAACCGAGTGACACCCTATGGAGAAAAGATCTACATGACCTTATCTGCTTATCTGGAGTTGGATCATTGCATCCAGCCGGCCGTCATCACTAAGGATGTGTGCATGGTCTTCTATTCCCGAGATGCCAAGATCTCACCACCGCGTTCTCTGCGAAACCTCTTTGGTAGTGGCTACTCAAAGTCACCAGACTCCAACCGAGTGACTGGGATCTATGAGCTGAGCTTATGCAAAATGGCAGATACTGGAAGCCCAGGCATGCAGAGGCGGAGGAGAAAAGTCTTGGATACCTCAGTGGCATATGTGCGGGGAGAGGAGAACCTAGCGGGCTGGCGACCTCGTGGAGACAGCCTCATTCTGGAACACCAGTGGGAGCTGGAGAAGCTGGAGCTGCTGCATGAGGTGGAAAAAACTCGCCACTTCTTGCTGCTTCGGGAGAGACTTGGTGACAGCGTCCCTAAGTCTCTGAGTGACTCACTGTCCCCCAGCCTGAGCAGTGGAACCCTTAGCACCTCCACCAGCATCTCCTCTCAGATCTCAACCACCACCTTTGAAAGCGCCATCACACCGAGCGAGAGCAGTGGCTACGACTCGGCAGACGTTGAAAGCCTGGTCGACCGGGAGAAAGAGCTGGCTACAAAGTGCCTGCAGCTTCTCACCCACACTTTCAACCGAGAATTCAGCCAGGTGCACGGCAGCATCAGTGACTGTAAGTTGTCTGACATCTCTCCAATTGGACGGGACCCCTCTGTGTCCAGTTTCAGCAGTTCCACCCTCACGCCCTCCTCCACTTGCCCCTCCTTGGTGGACTCCAGGAGCAGCTCTATGGATCAGAAAGAAGCCTTGTTGGCTGAGATGGGAGTTGCCATACGGGAAGATGGGGGGACACTTGGAGTTTTCTCTCCTAAAAAGACCCCACATCTTGTTAACCTCAATGAAGACCCATTAATGTCGGAGTGTTTGCTCTATTACATCAAGGATGGAATTACAAGGGTTGGCCAGGCAGATGCTGAGCGGCGCCAGGACATAGTGCTGAGTGGGGCCCACATTAAAGAGGAGCATTGTCTCTTTCGGAGTGAGAGGAGCAACACTGGTGAAGTTATTGTGACCTTGGAGCCCTGTGAGCGCTCAGAAACATACGTGAATGGCAAGAGGGTGGCTCATCCTGTTCAGCTGCGCTCAGGGAACCGTATCATCATGGGTAAAAACCATGTTTTTCGTTTTAACCACCCTGAACAAGCGCGAGCAGAAAGGGAAAAGACTCCCTCAGCTGAGACCCCCTCTGAGCCTGTGGACTGGACCTTTGCTCAGAGAGAGCTTCTCGAAAAACAAGGAATTGATATGAAACAGGAGATGGAAAAGAGGCTTCAGGAAATGGAGATCCTTTACAAAAAGGAGAAGGAGGAAGCCGATCTTCTCCTGGAGCAGCAGAGACTGGACTACGAGAGTAAATTGCAGGCCTTGCAGAGGCAGGTTGAGACTCGATCTCTGGCTGCAGAGACAACGGAAGAGGAGGAAGAGGAGGAGGAAGTTCCTTGGACACAGCATGAATTTGAGTTGGCCCAGTGGGCGTTCCGGAAATGGAAGTCTCACCAGTTTACTTCATTAAGGGACTTACTCTGGGGCAATGCGGTGTACCTGAAGGAAGCCAATGCCATCAGTGTGGAACTAAAGAAAAAGGTGCAGTTCCAGTTTGTTCTGCTGACTGACACGCTGTACTCCCCTGTGCCTCCTGAACTGCTTCCCTCGGAGATGGAGAAGACGCACGAGGACAGACCTTTCCCTCGGACTGTGGTGGCGGTGGAGGTCCAGGATCTGAAGAATGGAGCAACACATTATTGGTCTTTGGATAAACTCAAGCAGAGACTGGATCTGATGCGAGAGATGTATGACAGGGCAGGGGAGGTGGCCTCCAGTGCCCAAGATGACAGCGAGACGACCATGACCGGCAGCGACCCATTCTACGATCGGTTCCACTGGTTCAAACTTGTGGGAAGCTCCCCTATTTTCCACGGCTGTGTGAATGAGCGCCTTGCCGACCGCACACCCTCCCCCACTTTTTCCACGGCCGATTCCGACATCACTGAACTGGCTGACGAGCAGCAGGATGCCATGGAGGACTTTGATGATGAGGCATTCGTGGATGACACCGGCTCTGACGCAGGGACGGAAGAGGGATCAGAGCTCTTCAGTGATGGGCATGACCCATTTTACGACCGATCCCCTTGGTTCATTTTAGTAGGAAGGGCATTTGTGTACTTGAGCAACCTGCTGTATCCGGTGCCCCTGATTCACAGGGTGGCCATTGTCAGTGAGAAGGGGGAAGTCCGGGGATTTCTTCGTGTGGCTGTGCAGGCCATTGCAGCGGATGAAGAAGCCCCTGATTATGGCTCTGGAATCCGGCAGTCGGGAACAGCTAAAATATCTTTTGATAATGAATACTTTAATCAGAGTGACTTCTCGTCAGCTGCAATGACTCGTTCTGGTCTGTCCTTGGAGGAGCTGAGGATTGTGGAAGGTCAGGGCCAGAGTTCTGAAGTCATCAGTCCTCCAGAAGAAGTCAATCGAATGAACGACCTGGATTTGAAGTCAGGCACTTTGCTGGATGGGAAGATGGTGATGGAAGGGTTTTCTGAAGAGATTGGTAACCACCTGAAGCTGGGCAGTGCCTTCACTTTCCGAGTCACTGTGCTCCAAGCCAGCGGGATCCTTCCAGAGTATGCAGACATCTTCTGTCAGTTCAACTTTTTGCATCGGCATGATGAAGCGTTCTCCACTGAACCCCTCAAGAACAATGGAAGAGGAAGTCCCCTGGGCTTCTACCATGTACAGAACATTGCGGTGGAGGTCACAGAGTCGTTTGTGGACTACATCAAAACCAAGCCCATTGTATTCGAGGTCTTTGGGCACTACCAGCAGCACCCACTCCATCTGCAAGGACAAGATCTTAACAGTCCACCTCAGCCATCTCGGAGATTCTTCCCCCCACCCATGCCACTCTCCAAGCCAGTTCCAGCTACTAAGTTAAACACCATGAACAAAACCACCCTTGGGCAAAGCATGAGCAAGTACGACCTTCTGGTTTGGTTTGAGATCAGTGAACTGGAGCCTACTGGAGAGTATATTCCAGCTGTGGTTGACCATACTGCAGGCCTGCCCTGCCAGGGGACATTTTTGCTGCACCAGGGCATCCAGCGACGGATCACAGTGACTATCATCCACGAGAAGGGCAGTGAGCTCCACTGGAAAGATGTCCGTGAGCTGGTGGTAGGTCGGATTAGGAATAAACCGGAGGTAGATGAAGCTGCAGTTGATGCTGTTCTTTCCCTGAACATCATCTCTGCTAAGTCCCTGAAGGCTGCCCACAGCTCCAGCAGGACCTTCTACCGTTTCGAGGCAGTATGGGACAGCTCCCTACATAACTCCCTCCTTCTGAACCGAGTGACACCCTATGGAGAAAAGATCTACATGACCTTATCTGCTTATCTGGAGTTGGATCATTGCATCCAGCCGGCCGTCATCACTAAGGATGTGTGCATGGTCTTCTATTCCCGAGATGCCAAGATCTCACCACCGCGTTCTCTGCGAAACCTCTTTGGTAGTGGCTACTCAAAGTCACCAGACTCCAACCGAGTGACTGGGATCTATGAGCTGAGCTTATGCAAAATGGCAGATACTGGAAGCCCAGGCATGCAGAGGCGGAGGAGAAAAGTCTTGGATACCTCAGTGGCATATGTGCGGGGAGAGGAGAACCTAGCGGGCTGGCGACCTCGTGGAGACAGCCTCATTCTGGAACACCAGTGGGAGCTGGAGAAGCTGGAGCTGCTGCATGAGGTGGAAAAAACTCGCCACTTCTTGCTGCTTCGGGAGAGACTTGGTGACAGCGTCCCTAAGTCTCTGAGTGACTCACTGTCCCCCAGCCTGAGCAGTGGAACCCTTAGCACCTCCACCAGCATCTCCTCTCAGATCTCAACCACCACCTTTGAAAGCGCCATCACACCGAGCGAGAGCAGTGGCTACGACTCGGCAGACGTTGAAAGCCTGGTCGACCGGGAGAAAGAGCTGGCTACAAAGTGCCTGCAGCTTCTCACCCACACTTTCAACCGAGAATTCAGCCAGGTGCACGGCAGCATCAGTGACTGTAAGTTGTCTGACATCTCTCCAATTGGACGGGACCCCTCTGTGTCCAGTTTCAGCAGTTCCACCCTCACGCCCTCCTCCACTTGCCCCTCCTTGGTGGACTCCAGGAGCAGCTCTATGGATCAG
Peptide sequence:
MGVAIREDGGTLGVFSPKKTPHLVNLNEDPLMSECLLYYIKDGITRVGQADAERRQDIVLSGAHIKEEHCLFRSERSNTGEVIVTLEPCERSETYVNGKRVAHPVQLRSGNRIIMGKNHVFRFNHPEQARAEREKTPSAETPSEPVDWTFAQRELLEKQGIDMKQEMEKRLQEMEILYKKEKEEADLLLEQQRLDYESKLQALQRQVETRSLAAETTEEEEEEEEVPWTQHEFELAQWAFRKWKSHQFTSLRDLLWGNAVYLKEANAISVELKKKVQFQFVLLTDTLYSPVPPELLPSEMEKTHEDRPFPRTVVAVEVQDLKNGATHYWSLDKLKQRLDLMREMYDRAGEVASSAQDDSETTMTGSDPFYDRFHWFKLVGSSPIFHGCVNERLADRTPSPTFSTADSDITELADEQQDAMEDFDDEAFVDDTGSDAGTEEGSELFSDGHDPFYDRSPWFILVGRAFVYLSNLLYPVPLIHRVAIVSEKGEVRGFLRVAVQAIAADEEAPDYGSGIRQSGTAKISFDNEYFNQSDFSSAAMTRSGLSLEELRIVEGQGQSSEVISPPEEVNRMNDLDLKSGTLLDGKMVMEGFSEEIGNHLKLGSAFTFRVTVLQASGILPEYADIFCQFNFLHRHDEAFSTEPLKNNGRGSPLGFYHVQNIAVEVTESFVDYIKTKPIVFEVFGHYQQHPLHLQGQDLNSPPQPSRRFFPPPMPLSKPVPATKLNTMNKTTLGQSMSKYDLLVWFEISELEPTGEYIPAVVDHTAGLPCQGTFLLHQGIQRRITVTIIHEKGSELHWKDVRELVVGRIRNKPEVDEAAVDAVLSLNIISAKSLKAAHSSSRTFYRFEAVWDSSLHNSLLLNRVTPYGEKIYMTLSAYLELDHCIQPAVITKDVCMVFYSRDAKISPPRSLRNLFGSGYSKSPDSNRVTGIYELSLCKMADTGSPGMQRRRRKVLDTSVAYVRGEENLAGWRPRGDSLILEHQWELEKLELLHEVEKTRHFLLLRERLGDSVPKSLSDSLSPSLSSGTLSTSTSISSQISTTTFESAITPSESSGYDSADVESLVDREKELATKCLQLLTHTFNREFSQVHGSISDCKLSDISPIGRDPSVSSFSSSTLTPSSTCPSLVDSRSSSMDQKEALLAEMGVAIREDGGTLGVFSPKKTPHLVNLNEDPLMSECLLYYIKDGITRVGQADAERRQDIVLSGAHIKEEHCLFRSERSNTGEVIVTLEPCERSETYVNGKRVAHPVQLRSGNRIIMGKNHVFRFNHPEQARAEREKTPSAETPSEPVDWTFAQRELLEKQGIDMKQEMEKRLQEMEILYKKEKEEADLLLEQQRLDYESKLQALQRQVETRSLAAETTEEEEEEEEVPWTQHEFELAQWAFRKWKSHQFTSLRDLLWGNAVYLKEANAISVELKKKVQFQFVLLTDTLYSPVPPELLPSEMEKTHEDRPFPRTVVAVEVQDLKNGATHYWSLDKLKQRLDLMREMYDRAGEVASSAQDDSETTMTGSDPFYDRFHWFKLVGSSPIFHGCVNERLADRTPSPTFSTADSDITELADEQQDAMEDFDDEAFVDDTGSDAGTEEGSELFSDGHDPFYDRSPWFILVGRAFVYLSNLLYPVPLIHRVAIVSEKGEVRGFLRVAVQAIAADEEAPDYGSGIRQSGTAKISFDNEYFNQSDFSSAAMTRSGLSLEELRIVEGQGQSSEVISPPEEVNRMNDLDLKSGTLLDGKMVMEGFSEEIGNHLKLGSAFTFRVTVLQASGILPEYADIFCQFNFLHRHDEAFSTEPLKNNGRGSPLGFYHVQNIAVEVTESFVDYIKTKPIVFEVFGHYQQHPLHLQGQDLNSPPQPSRRFFPPPMPLSKPVPATKLNTMNKTTLGQSMSKYDLLVWFEISELEPTGEYIPAVVDHTAGLPCQGTFLLHQGIQRRITVTIIHEKGSELHWKDVRELVVGRIRNKPEVDEAAVDAVLSLNIISAKSLKAAHSSSRTFYRFEAVWDSSLHNSLLLNRVTPYGEKIYMTLSAYLELDHCIQPAVITKDVCMVFYSRDAKISPPRSLRNLFGSGYSKSPDSNRVTGIYELSLCKMADTGSPGMQRRRRKVLDTSVAYVRGEENLAGWRPRGDSLILEHQWELEKLELLHEVEKTRHFLLLRERLGDSVPKSLSDSLSPSLSSGTLSTSTSISSQISTTTFESAITPSESSGYDSADVESLVDREKELATKCLQLLTHTFNREFSQVHGSISDCKLSDISPIGRDPSVSSFSSSTLTPSSTCPSLVDSRSSSMDQ
IRESfinder result
IRESfinder score
0.470667804
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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