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mmu_circGolga3_1167_2
Basic information of circular RNA
PanCircBase ID:
mmu_circGolga3_1167_2
mm39_Chr. Position ID:
chr5|110353642|110366082|+
Gene name:
Golga3
Transcript:
ENSMUST00000112512.8
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
8
Exon/intron indexes:
14,15,16,17,18,19,20,21
Exon/intron offsets:
0,1779,2663,3998,6454,11057,12034,12317
Genomic length:
12440
Exon/intron sizes in nt:
95,21,71,44,19,81,17,10,00,00,000
Flanking exon/introns:
chr5:110352909-110353642|chr5:110366082-110368647
Splice length:
1167
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
TCTTTGAAGTTTGACAAAGAGCAGATGATAGCCCTTACCGAGGCCAATGAGACACTGAAGAAACAAATAGAAGAGCTGCAACAAGAGGCCAAGAAGGCCATCACAGAACAGAAGCAGAAGATGAAGAGGCTGGGCTCAGATCTGTCCAGCGCCCAGAAGGAGATGAAGACTAAGCACAAAGCTTATGAGAATGCTGTGAGCATTCTCAGCCGTCGCCTGCAGGAGGCTCTGGCTTCTAAGGAGGCTACAGATGCAGAGCTGAACCAGCTCAGAGCTCAGAGCACAGGTGGCAGCAGTGACCCTGTCCTACATGAGAAGATTCGTGCTCTGGAGGTGGAACTGCAGAATGTTGGCCAAAGCAAGATACTACTGGAGAAGGAGTTACAGGAGGTGATCACAATGACTAGCCAGGAGCTGGAAGAGTCCCGGGAGAAGGTGCTGGAGCTAGAAGATGAGCTTCAAGAATCCAGAGGCTTCAGAAGGAAGATAAAACGTCTTGAAGAGTCAAATAAGAAACTAGCTCTGGAGTTAGAGCATGAGCGAGGGAAGCTCACTGGCCTTGGACAATCTAATGCAGCGCTGCGGGAGCACAACAGCATTCTGGAGACTGCACTAGCCAAGAGGGAAGCTGACCTGGTACAGCTGAATCTGCAGGTGCAGGCAGTTTTACAGCGCAAAGAGGAGGAGGATCGCCAGATGAAGCAACTTGTCCAAGCCTTACAAGTCTCACTAGAGAAAGAAAAGATGGAAGTGAACAGCCTGAAGGAACAGATGGCTGCTGCCAGGATAGAAGCTGGGCACAACCGCCGCCACTTTAAGGCAGCTACTTTGGAGCTGAGTGAGGTGAAGAAAGAATTGCAGGCCAAAGAACACCTGGTACAGACATTGCAGGCCGAGGTGGATGAGCTCCAGATTCAGGATGGAAAGCATTCTCAAGAAATAGCACAATTCCAGACTGAGCTGGCAGAAGCTAGAACCCAGCTCCAGCTCCTACAGAAGAAGCTAGATGAGCAGATGAGCCAGCAACCGACAGGGAGCCAAGAGATGGAAGATCTCAAATGGGAATTGGATCAGAAAGAACGAGAGATTCAGTCCCTGAAGCAGCAGCTTGACTTGACAGAGCAACAGGGCAAGAAAGAACTGGAGGGGACACAGCAGACACTTCAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
TTCAGTCCCTGAAGCAGCAG
59.96
GCCTCTTGTTGCAGCTCTTC
59.48
169
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
TTGACAGAGCAACAGGGCAA
60.11
GCCTCTTGTTGCAGCTCTTC
59.48
143
PCR template sequence:
GGATCAGAAAGAACGAGAGATTCAGTCCCTGAAGCAGCAGCTTGACTTGACAGAGCAACAGGGCAAGAAAGAACTGGAGGGGACACAGCAGACACTTCAGTCTTTGAAGTTTGACAAAGAGCAGATGATAGCCCTTACCGAGGCCAATGAGACACTGAAGAAACAAATAGAAGAGCTGCAACAAGAGGCCAAGAAGGCCA
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
8
Interacting miRNAs (#binding sites)
mmu-miR-149-5p(1), mmu-miR-22-3p(1), mmu-miR-127-5p(1), mmu-miR-218-5p(1), mmu-miR-705(1), mmu-miR-207(1), mmu-miR-335-3p(1), mmu-miR-1904(1)
siRNAs for circular RNA silencing
Junction sequence
GCAGACACTTCAGTCTTTGAAGTTTG
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCGOLGA3_1167_2_ORF_1
1.1938
0.431849032
0.999999786
2310
ORF sequence:
ATGATAGCCCTTACCGAGGCCAATGAGACACTGAAGAAACAAATAGAAGAGCTGCAACAAGAGGCCAAGAAGGCCATCACAGAACAGAAGCAGAAGATGAAGAGGCTGGGCTCAGATCTGTCCAGCGCCCAGAAGGAGATGAAGACTAAGCACAAAGCTTATGAGAATGCTGTGAGCATTCTCAGCCGTCGCCTGCAGGAGGCTCTGGCTTCTAAGGAGGCTACAGATGCAGAGCTGAACCAGCTCAGAGCTCAGAGCACAGGTGGCAGCAGTGACCCTGTCCTACATGAGAAGATTCGTGCTCTGGAGGTGGAACTGCAGAATGTTGGCCAAAGCAAGATACTACTGGAGAAGGAGTTACAGGAGGTGATCACAATGACTAGCCAGGAGCTGGAAGAGTCCCGGGAGAAGGTGCTGGAGCTAGAAGATGAGCTTCAAGAATCCAGAGGCTTCAGAAGGAAGATAAAACGTCTTGAAGAGTCAAATAAGAAACTAGCTCTGGAGTTAGAGCATGAGCGAGGGAAGCTCACTGGCCTTGGACAATCTAATGCAGCGCTGCGGGAGCACAACAGCATTCTGGAGACTGCACTAGCCAAGAGGGAAGCTGACCTGGTACAGCTGAATCTGCAGGTGCAGGCAGTTTTACAGCGCAAAGAGGAGGAGGATCGCCAGATGAAGCAACTTGTCCAAGCCTTACAAGTCTCACTAGAGAAAGAAAAGATGGAAGTGAACAGCCTGAAGGAACAGATGGCTGCTGCCAGGATAGAAGCTGGGCACAACCGCCGCCACTTTAAGGCAGCTACTTTGGAGCTGAGTGAGGTGAAGAAAGAATTGCAGGCCAAAGAACACCTGGTACAGACATTGCAGGCCGAGGTGGATGAGCTCCAGATTCAGGATGGAAAGCATTCTCAAGAAATAGCACAATTCCAGACTGAGCTGGCAGAAGCTAGAACCCAGCTCCAGCTCCTACAGAAGAAGCTAGATGAGCAGATGAGCCAGCAACCGACAGGGAGCCAAGAGATGGAAGATCTCAAATGGGAATTGGATCAGAAAGAACGAGAGATTCAGTCCCTGAAGCAGCAGCTTGACTTGACAGAGCAACAGGGCAAGAAAGAACTGGAGGGGACACAGCAGACACTTCAGTCTTTGAAGTTTGACAAAGAGCAGATGATAGCCCTTACCGAGGCCAATGAGACACTGAAGAAACAAATAGAAGAGCTGCAACAAGAGGCCAAGAAGGCCATCACAGAACAGAAGCAGAAGATGAAGAGGCTGGGCTCAGATCTGTCCAGCGCCCAGAAGGAGATGAAGACTAAGCACAAAGCTTATGAGAATGCTGTGAGCATTCTCAGCCGTCGCCTGCAGGAGGCTCTGGCTTCTAAGGAGGCTACAGATGCAGAGCTGAACCAGCTCAGAGCTCAGAGCACAGGTGGCAGCAGTGACCCTGTCCTACATGAGAAGATTCGTGCTCTGGAGGTGGAACTGCAGAATGTTGGCCAAAGCAAGATACTACTGGAGAAGGAGTTACAGGAGGTGATCACAATGACTAGCCAGGAGCTGGAAGAGTCCCGGGAGAAGGTGCTGGAGCTAGAAGATGAGCTTCAAGAATCCAGAGGCTTCAGAAGGAAGATAAAACGTCTTGAAGAGTCAAATAAGAAACTAGCTCTGGAGTTAGAGCATGAGCGAGGGAAGCTCACTGGCCTTGGACAATCTAATGCAGCGCTGCGGGAGCACAACAGCATTCTGGAGACTGCACTAGCCAAGAGGGAAGCTGACCTGGTACAGCTGAATCTGCAGGTGCAGGCAGTTTTACAGCGCAAAGAGGAGGAGGATCGCCAGATGAAGCAACTTGTCCAAGCCTTACAAGTCTCACTAGAGAAAGAAAAGATGGAAGTGAACAGCCTGAAGGAACAGATGGCTGCTGCCAGGATAGAAGCTGGGCACAACCGCCGCCACTTTAAGGCAGCTACTTTGGAGCTGAGTGAGGTGAAGAAAGAATTGCAGGCCAAAGAACACCTGGTACAGACATTGCAGGCCGAGGTGGATGAGCTCCAGATTCAGGATGGAAAGCATTCTCAAGAAATAGCACAATTCCAGACTGAGCTGGCAGAAGCTAGAACCCAGCTCCAGCTCCTACAGAAGAAGCTAGATGAGCAGATGAGCCAGCAACCGACAGGGAGCCAAGAGATGGAAGATCTCAAATGGGAATTGGATCAGAAAGAACGAGAGATTCAGTCCCTGAAGCAGCAGCTTGACTTGACAGAGCAACAGGGCAAGAAAGAACTGGAGGGGACACAGCAGACACTTCAG
Peptide sequence:
MIALTEANETLKKQIEELQQEAKKAITEQKQKMKRLGSDLSSAQKEMKTKHKAYENAVSILSRRLQEALASKEATDAELNQLRAQSTGGSSDPVLHEKIRALEVELQNVGQSKILLEKELQEVITMTSQELEESREKVLELEDELQESRGFRRKIKRLEESNKKLALELEHERGKLTGLGQSNAALREHNSILETALAKREADLVQLNLQVQAVLQRKEEEDRQMKQLVQALQVSLEKEKMEVNSLKEQMAAARIEAGHNRRHFKAATLELSEVKKELQAKEHLVQTLQAEVDELQIQDGKHSQEIAQFQTELAEARTQLQLLQKKLDEQMSQQPTGSQEMEDLKWELDQKEREIQSLKQQLDLTEQQGKKELEGTQQTLQSLKFDKEQMIALTEANETLKKQIEELQQEAKKAITEQKQKMKRLGSDLSSAQKEMKTKHKAYENAVSILSRRLQEALASKEATDAELNQLRAQSTGGSSDPVLHEKIRALEVELQNVGQSKILLEKELQEVITMTSQELEESREKVLELEDELQESRGFRRKIKRLEESNKKLALELEHERGKLTGLGQSNAALREHNSILETALAKREADLVQLNLQVQAVLQRKEEEDRQMKQLVQALQVSLEKEKMEVNSLKEQMAAARIEAGHNRRHFKAATLELSEVKKELQAKEHLVQTLQAEVDELQIQDGKHSQEIAQFQTELAEARTQLQLLQKKLDEQMSQQPTGSQEMEDLKWELDQKEREIQSLKQQLDLTEQQGKKELEGTQQTLQ
IRESfinder result
IRESfinder score
0.305227861
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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