top of page
mmu_circFut8_828
Basic information of circular RNA
PanCircBase ID:
mmu_circFut8_828
mm39_Chr. Position ID:
chr12|77378669|77440611|+
Gene name:
Fut8
Transcript:
ENSMUST00000177595.9
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
4
Exon/intron indexes:
5,6,7,8
Exon/intron offsets:
0,33073,33301,61827
Genomic length:
61942
Exon/intron sizes in nt:
434,116,163,115
Flanking exon/introns:
chr12:77370711-77378669|chr12:77440611-77459485
Splice length:
828
Other database IDs:
CIRCpedia: MMU_CIRCpedia_29630, circAtlas: mmu-Fut8_0006
circBase: hsa_circ_0102434, circAtlas: hsa-FUT8_0005, CIRCpedia: HSA_CIRCpedia_12702
Human Ortholog IDs:
Mature spliced Sequence:
CATGTAGGATCCATGAAGCACAGGACATTCAAGCCTCCCGCCCGCGTCACCAGGAAGATCTCTTTGTAAGAATAACCACAGGATTGATTTCCAGAGAGATTAGCCTGTCTGAAGCATTATGTGTTGAAGCAAAAGAAACCTATTTTCTTGTGTGGCTAACTAGAACCAGAGTACAATGTTTCCAGTTCTTTGAGCTCCAGGAAGATAGAGGACAGAGTTGAAACTCTGAAAATGCGGGCATGGACTGGTTCCTGGCGTTGGATTATGCTCATTCTTTTTGCCTGGGGGACCTTGTTATTTTATATAGGTGGTCATTTGGTTCGAGATAATGACCACCCTGATCACTCCAGCAGAGAACTCTCCAAGATTCTTGCAAAGCTTGAACGCTTAAAACAGCAAAATGAAGACTTGAGGCGAATGGCTGAGTCTCTCCGAATACCAGAAGGCCCCATTGACCAGGGGACAGCTACAGGAAGAGTCCGTGTTTTAGAAGAACAGCTTGTTAAGGCCAAAGAACAGATTGAAAATTACAAGAAACAAGCTAGAAATGGTCTGGGGAAGGATCATGAAATCTTAAGAAGGAGGATTGAAAATGGAGCTAAAGAGCTCTGGTTTTTTCTACAAAGCGAACTGAAGAAATTAAAGCATTTAGAAGGAAATGAACTCCAAAGACATGCAGATGAAATTCTTTTGGATTTAGGACACCATGAAAGGTCTATCATGACAGATCTATACTACCTCAGTCAAACAGATGGAGCAGGGGATTGGCGTGAAAAAGAGGCCAAAGATCTGACAGAGCTGGTCCAGCGGAGAATAACATATCTCCAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
CAGATGGAGCAGGGGATTGG
60.18
GAGATCTTCCTGGTGACGCG
60.53
142
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
CAAACAGATGGAGCAGGGGA
59.67
GAGATCTTCCTGGTGACGCG
60.53
146
PCR template sequence:
TCTATACTACCTCAGTCAAACAGATGGAGCAGGGGATTGGCGTGAAAAAGAGGCCAAAGATCTGACAGAGCTGGTCCAGCGGAGAATAACATATCTCCAGCATGTAGGATCCATGAAGCACAGGACATTCAAGCCTCCCGCCCGCGTCACCAGGAAGATCTCTTTGTAAGAATAACCACAGGATTGATTTCCAGAGAGAT
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
11
Interacting miRNAs (#binding sites)
mmu-miR-9-5p(1), mmu-miR-155-5p(1), mmu-let-7a-5p(1), mmu-let-7b-5p(1), mmu-let-7c-5p(1), mmu-miR-185-5p(1), mmu-let-7d-5p(1), mmu-miR-136-5p(1), mmu-miR-433-3p(1), mmu-miR-218-5p(1), mmu-miR-98-5p(1)
siRNAs for circular RNA silencing
Junction sequence
AACATATCTCCAGCATGTAGGATCCA
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCFUT8_828_ORF_1
0.9016
0.044022366
0.799135354
666
ORF sequence:
ATGCGGGCATGGACTGGTTCCTGGCGTTGGATTATGCTCATTCTTTTTGCCTGGGGGACCTTGTTATTTTATATAGGTGGTCATTTGGTTCGAGATAATGACCACCCTGATCACTCCAGCAGAGAACTCTCCAAGATTCTTGCAAAGCTTGAACGCTTAAAACAGCAAAATGAAGACTTGAGGCGAATGGCTGAGTCTCTCCGAATACCAGAAGGCCCCATTGACCAGGGGACAGCTACAGGAAGAGTCCGTGTTTTAGAAGAACAGCTTGTTAAGGCCAAAGAACAGATTGAAAATTACAAGAAACAAGCTAGAAATGGTCTGGGGAAGGATCATGAAATCTTAAGAAGGAGGATTGAAAATGGAGCTAAAGAGCTCTGGTTTTTTCTACAAAGCGAACTGAAGAAATTAAAGCATTTAGAAGGAAATGAACTCCAAAGACATGCAGATGAAATTCTTTTGGATTTAGGACACCATGAAAGGTCTATCATGACAGATCTATACTACCTCAGTCAAACAGATGGAGCAGGGGATTGGCGTGAAAAAGAGGCCAAAGATCTGACAGAGCTGGTCCAGCGGAGAATAACATATCTCCAGCATGTAGGATCCATGAAGCACAGGACATTCAAGCCTCCCGCCCGCGTCACCAGGAAGATCTCTTTGTAA
Peptide sequence:
MRAWTGSWRWIMLILFAWGTLLFYIGGHLVRDNDHPDHSSRELSKILAKLERLKQQNEDLRRMAESLRIPEGPIDQGTATGRVRVLEEQLVKAKEQIENYKKQARNGLGKDHEILRRRIENGAKELWFFLQSELKKLKHLEGNELQRHADEILLDLGHHERSIMTDLYYLSQTDGAGDWREKEAKDLTELVQRRITYLQHVGSMKHRTFKPPARVTRKISL
IRESfinder result
IRESfinder score
0.694558109
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
bottom of page